Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89188 | Canola | nucleus | 86.64 | 88.3 |
| CDY14248 | Canola | nucleus | 81.21 | 79.23 |
| CDY67879 | Canola | nucleus | 77.87 | 78.03 |
| CDY25250 | Canola | nucleus | 78.91 | 76.83 |
| CDX97433 | Canola | nucleus | 78.5 | 76.42 |
| AT4G28300.1 | Thale cress | nucleus | 79.12 | 76.41 |
| CDY29896 | Canola | nucleus | 76.41 | 75.15 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 20.25 | 64.24 |
| KRH55962 | Soybean | nucleus | 26.72 | 62.75 |
| Solyc07g053990.2.1 | Tomato | nucleus | 49.06 | 47.19 |
| PGSC0003DMT400047245 | Potato | nucleus | 49.69 | 44.32 |
| KRH25575 | Soybean | nucleus | 49.27 | 44.19 |
| Solyc10g008340.2.1 | Tomato | extracellular | 49.69 | 43.67 |
| PGSC0003DMT400034191 | Potato | nucleus | 49.48 | 43.25 |
| KRH26948 | Soybean | nucleus | 44.26 | 39.85 |
| KRH22387 | Soybean | nucleus | 43.22 | 38.55 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 34.86 | 35.01 |
| KRH55961 | Soybean | cytosol | 19.42 | 34.07 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 22.76 | 31.14 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.94 | 30.91 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 38.62 | 30.53 |
| Zm00001d012728_P001 | Maize | nucleus | 37.16 | 30.48 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.0 | 30.18 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 37.79 | 29.87 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 37.58 | 29.85 |
| EES03625 | Sorghum | nucleus | 36.33 | 29.64 |
| Os01t0754500-01 | Rice | nucleus | 36.12 | 29.12 |
| Os05t0561600-01 | Rice | plastid | 26.72 | 24.71 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 26.51 | 24.01 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 26.3 | 23.73 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 25.89 | 23.48 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.68 | 23.16 |
| OQU78421 | Sorghum | plastid | 25.05 | 23.12 |
| Zm00001d038998_P001 | Maize | plastid | 24.22 | 22.14 |
| EES03419 | Sorghum | nucleus | 24.84 | 22.12 |
| Zm00001d043906_P002 | Maize | nucleus | 25.05 | 21.86 |
| TraesCS3D01G271600.1 | Wheat | plastid | 24.43 | 21.83 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 23.59 | 21.65 |
| TraesCS3B01G305700.1 | Wheat | plastid | 24.22 | 21.64 |
| TraesCS3A01G272000.1 | Wheat | plastid | 24.01 | 21.62 |
| CDX91045 | Canola | nucleus | 21.71 | 21.4 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 20.04 | 21.1 |
| CDX85594 | Canola | nucleus | 21.29 | 20.94 |
| Zm00001d011562_P003 | Maize | plastid | 23.38 | 19.38 |
Protein Annotations
| EnsemblPlants:CDY18985 | EnsemblPlantsGene:GSBRNA2T00006221001 | InterPro:DUF1421 | PANTHER:PTHR31805 | PANTHER:PTHR31805:SF3 | PFAM:PF07223 |
| ProteinID:CDY18985 | ProteinID:CDY18985.1 | SEG:seg | UniParc:UPI0004EECFB0 | UniProt:A0A078FX54 | MapMan:35.2 |
Description
BnaC01g20830DBnaC01g20830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FX54]
Coordinates
chrLK032091:-:174229..176360
Molecular Weight (calculated)
52657.2 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.923
Length
479 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRVNSGS KGFDFGSDDI LCSYDDFANQ DSSNGPNSDH AIAANKEFHK TRMARSSVFP TSSYSPPEDS LSQDINATVE STMKKYSDNM MRFLEGISSR
101: LSQLELYCYN LDKTIGEMRS DLTRDNDEAD VKLRSMDKHL QEVHRSVQIL RDKQELFDTQ KELARLQLVH KDSSSSSHGE ERVATPVPEP KKIDNTSDAH
201: NNHLALALPH QIAPQPQQQH QQQYYMPPTS QLQNTPAPAP VPAPPSQPRA PPAQGQFMPP PPAPSQPSSA QPQSFPQYQQ NWPPQPQARP QSSGAYPMFS
301: LATPSNQSPV EPLPSSMQMQ SPYAGPPQQS MQAYGYGAPP PQAPQQTKMS YSPQTGDGYL PSGPPPPGYT NAIYESGRMQ YPPPQPHQQQ QQAHYMQGPQ
401: GGGYAPQQHQ AGGGNSGTPP PVLRTKYGEL IEKLMSMGFR GDHVIAVIQR MEESGQPIEF NALLDKLSVQ SSGGPPRGW
101: LSQLELYCYN LDKTIGEMRS DLTRDNDEAD VKLRSMDKHL QEVHRSVQIL RDKQELFDTQ KELARLQLVH KDSSSSSHGE ERVATPVPEP KKIDNTSDAH
201: NNHLALALPH QIAPQPQQQH QQQYYMPPTS QLQNTPAPAP VPAPPSQPRA PPAQGQFMPP PPAPSQPSSA QPQSFPQYQQ NWPPQPQARP QSSGAYPMFS
301: LATPSNQSPV EPLPSSMQMQ SPYAGPPQQS MQAYGYGAPP PQAPQQTKMS YSPQTGDGYL PSGPPPPGYT NAIYESGRMQ YPPPQPHQQQ QQAHYMQGPQ
401: GGGYAPQQHQ AGGGNSGTPP PVLRTKYGEL IEKLMSMGFR GDHVIAVIQR MEESGQPIEF NALLDKLSVQ SSGGPPRGW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.