Factsheet for TraesCS3D01G271600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G492200.1
TraesCS2B01G520300.1
TraesCS2D01G492400.1
TraesCS3A01G362300.1
TraesCS3B01G394800.1
TraesCS3B01G394900.1
TraesCS3D01G356000.1
TraesCS6B01G238200.1
TraesCS6D01G192700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	TraesCS3A01G362300.1	AT2G39740.1	21798944
AT4G28300.1	TraesCS3B01G394800.1	AT2G39740.1	21798944
AT4G28300.1	TraesCS3B01G394900.1	AT2G39740.1	21798944
AT4G28300.1	TraesCS3D01G356000.1	AT2G39740.1	21798944
AT4G28300.1	TraesCS2A01G492200.1	AT3G51180.1	21798944
AT4G28300.1	TraesCS2B01G520300.1	AT3G51180.1	21798944
AT4G28300.1	TraesCS2D01G492400.1	AT3G51180.1	21798944
AT4G28300.1	TraesCS6B01G238200.1	AT4G24700.1	21798944
AT4G28300.1	TraesCS6D01G192700.1	AT4G24700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G305700.1	Wheat	plastid	97.39	97.39
TraesCS3A01G272000.1	Wheat	plastid	87.87	88.53
Os01t0672800-01	Rice	cytosol, nucleus	54.66	64.4
EES03419	Sorghum	nucleus	61.01	60.78
Zm00001d043906_P002	Maize	nucleus	61.19	59.74
TraesCS1D01G402000.1	Wheat	nucleus	47.39	47.83
Zm00001d011562_P003	Maize	plastid	48.32	44.81
VIT_12s0028g03740.t01	Wine grape	nucleus	9.14	32.45
KRH55962	Soybean	nucleus	11.75	30.88
GSMUA_Achr4P07980_001	Banana	nucleus	22.57	25.37
TraesCS3D01G292600.1	Wheat	nucleus	27.99	24.75
CDY18985	Canola	nucleus	21.83	24.43
Bra026268.1-P	Field mustard	nucleus	21.46	24.16
GSMUA_Achr4P15050_001	Banana	nucleus	22.01	23.84
AT4G28300.1	Thale cress	nucleus	22.01	23.79
Bra010376.1-P	Field mustard	nucleus	21.64	23.63
CDX97433	Canola	nucleus	21.64	23.58
CDY25250	Canola	nucleus	21.64	23.58
CDY14248	Canola	nucleus	21.46	23.42
Bra024211.1-P	Field mustard	nucleus	21.27	23.41
CDY29896	Canola	nucleus	21.27	23.41
CDX89188	Canola	nucleus	20.52	23.4
CDY67879	Canola	nucleus	20.71	23.22
KRH25575	Soybean	nucleus	22.76	22.85
Solyc10g008340.2.1	Tomato	extracellular	22.57	22.2
Solyc07g053990.2.1	Tomato	nucleus	20.34	21.89
KRH26948	Soybean	nucleus	21.64	21.8
PGSC0003DMT400034191	Potato	nucleus	22.2	21.72
PGSC0003DMT400047245	Potato	nucleus	21.27	21.23
KRH22387	Soybean	nucleus	20.71	20.67
VIT_12s0028g03730.t01	Wine grape	nucleus	12.31	18.86
KRH55961	Soybean	cytosol	9.14	17.95
TraesCS1D01G115300.1	Wheat	nucleus	16.23	15.16
TraesCS3D01G093200.1	Wheat	nucleus	16.6	15.11

Protein Annotations

EnsemblPlants:TraesCS3D01G271600.1	EnsemblPlantsGene:TraesCS3D01G271600	InterPro:DUF1421	ncoils:Coil	PANTHER:PTHR31805	PANTHER:PTHR31805:SF5
PFAM:PF07223	SEG:seg	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr3D:+:376814309..376816342

Molecular Weight (calculated)

59184.5 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.644

Length

536 amino acids

Sequence
(BLAST)

001: MASSPARPAA ASVSGAFGLP PDARCSFDQT RRRAEDSQDK RQLVRTFVNV YGQEGYPKEA VMAAVEECMR KQAEGLLHSL EGIGGRLSQL ELYCYKLERS
101: IGELRSDVMD YHSEGTVNFR CLDKNLRQVQ KAVQMLQDKH EPADTAQQLA KLQIAHEFPA RTNEATALSM LTARENVNDH STQFTNPEVS FVPIHQVNTM
201: QSPAMPNQSS GGYILQQLVP VSLSTQHDQQ HPSQAAVYYM QSQNQVNCAE NKPSESFVQV MQPHVQNPEA RVAVELPQKS SQPTEMYPPL QHHMLQMPAQ
301: HHESQAWRSQ PPVAQQQHYS VQPVPPQMVQ QKTSSPHAQS TPQVTLMYPQ YSSQKPANAT TEPLPRSLVG QSPYSSPQQK HHEVMHSFYG QGNTILLPTA
401: EHNIQHQQPQ QMQTQSQASC PPQPSKPSHC SVASYAVQGS GRAYTATYKN PAESPATVVA VLPQHSATAP MAFHHLGPQI LHKNPYGSMF ETTSVVGYPH
501: DQVGSMTLPV VTADSSAMVD KLNAGSNVTS PRDWPA

Best Arabidopsis Sequence Match ( AT4G28300.2 )
(BLAST)

001: MARSSVFPTS SYSPPEDSLS QDITDTVERT MKMYADNMMR FLEGLSSRLS QLELYCYNLD KTIGEMRSEL THAHEDADVK LRSLDKHLQE VHRSVQILRD
101: KQELADTQKE LAKLQLVQKE SSSSSHSQHG EDRVATPVPE PKKSENTSDA HNQQLALALP HQIAPQPQVQ PQPQPQQHQY YMPPPPTQLQ NTPAPVPVST
201: PPSQLQAPPA QSQFMPPPPA PSHPSSAQTQ SFPQYQQNWP PQPQARPQSS GGYPTYSPAP PGNQPPVESL PSSMQMQSPY SGPPQQSMQA YGYGAAPPPQ
301: APPQQTKMSY SPQTGDGYLP SGPPPPSGYA NAMYEGGRMQ YPPPQPQQQQ QQAHYLQGPQ GGGYSPQPHQ AGGGNIGAPP VLRSKYGELI EKLVSMGFRG
401: DHVMAVIQRM EESGQPIDFN TLLDRLSGQS SGGPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.