CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97851
KRH03218
KRH28782
KRH28783
KRH31028
KRH57138
KRH69800
KRH69802
KRH76672

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G28300.1	KRG97851	AT2G39740.1	21798944
AT4G28300.1	KRH31028	AT2G39740.1	21798944
AT4G28300.1	KRH28782	AT3G51180.1	21798944
AT4G28300.1	KRH28783	AT3G51180.1	21798944
AT4G28300.1	KRH69800	AT3G51180.1	21798944
AT4G28300.1	KRH69802	AT3G51180.1	21798944
AT4G28300.1	KRH76672	AT3G51180.1	21798944
AT4G28300.1	KRH03218	AT4G24700.1	21798944
AT4G28300.1	KRH57138	AT4G24700.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22387	Soybean	nucleus	87.22	86.41
KRH55962	Soybean	nucleus	24.81	64.71
KRH25575	Soybean	nucleus	60.15	59.93
KRH55961	Soybean	cytosol	28.95	56.41
VIT_12s0028g03740.t01	Wine grape	nucleus	14.85	52.32
Solyc07g053990.2.1	Tomato	nucleus	46.24	49.4
PGSC0003DMT400047245	Potato	nucleus	46.8	46.37
AT4G28300.1	Thale cress	nucleus	42.48	45.56
Solyc10g008340.2.1	Tomato	extracellular	46.24	45.14
PGSC0003DMT400034191	Potato	nucleus	46.24	44.89
VIT_12s0028g03730.t01	Wine grape	nucleus	29.32	44.57
CDY18985	Canola	nucleus	39.85	44.26
Bra010376.1-P	Field mustard	nucleus	40.79	44.2
CDY25250	Canola	nucleus	40.6	43.9
CDX97433	Canola	nucleus	40.6	43.9
CDY14248	Canola	nucleus	40.23	43.58
CDY67879	Canola	nucleus	38.72	43.1
Bra026268.1-P	Field mustard	nucleus	38.16	42.65
CDX89188	Canola	nucleus	37.41	42.34
Bra024211.1-P	Field mustard	nucleus	38.72	42.3
CDY29896	Canola	nucleus	38.72	42.3
GSMUA_Achr4P07980_001	Banana	nucleus	31.02	34.59
Zm00001d012728_P001	Maize	nucleus	33.83	30.82
EES03625	Sorghum	nucleus	33.27	30.15
Os01t0754500-01	Rice	nucleus	33.65	30.13
TraesCS3A01G292800.1	Wheat	nucleus	34.21	30.03
HORVU3Hr1G072520.1	Barley	nucleus	34.02	30.02
TraesCS3B01G327600.1	Wheat	nucleus	33.83	29.85
TraesCS3D01G292600.1	Wheat	nucleus	33.83	29.7
GSMUA_Achr4P15050_001	Banana	nucleus	25.75	27.68
Os05t0561600-01	Rice	plastid	25.38	26.06
TraesCS1A01G394400.1	Wheat	nucleus	25.56	25.71
TraesCS1D01G402000.1	Wheat	nucleus	25.38	25.42
HORVU1Hr1G086930.4	Barley	nucleus	25.19	25.24
Zm00001d038998_P001	Maize	plastid	24.62	25.0
OQU78421	Sorghum	plastid	24.25	24.86
TraesCS1B01G422400.1	Wheat	nucleus	24.06	24.24
Zm00001d009555_P003	Maize	endoplasmic reticulum, vacuole	23.31	23.75
Zm00001d043906_P002	Maize	nucleus	24.06	23.32
EES03419	Sorghum	nucleus	23.5	23.23
Os01t0672800-01	Rice	cytosol, nucleus	19.55	22.86
Zm00001d011562_P003	Maize	plastid	23.87	21.97
TraesCS3B01G305700.1	Wheat	plastid	21.99	21.83
TraesCS3D01G271600.1	Wheat	plastid	21.8	21.64
TraesCS3A01G272000.1	Wheat	plastid	21.24	21.24
KRH56551	Soybean	nucleus	20.49	19.02
KRG93222	Soybean	nucleus	20.3	18.69

Protein Annotations

EMBL:ACUP02007760	EnsemblPlants:KRH26948	EnsemblPlantsGene:GLYMA_12G204300	EntrezGene:100527106	InterPro:DUF1421	ncoils:Coil
PANTHER:PTHR31805	PANTHER:PTHR31805:SF3	PFAM:PF07223	ProteinID:KRH26948	ProteinID:KRH26948.1	SEG:seg
UniParc:UPI000233C5AF	UniProt:I1LUG6	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:36460015..36463984

Molecular Weight (calculated)

58507.8 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.782

Length

532 amino acids

Sequence
(BLAST)

001: MASLPSSRSN GGSNGFDLGS GDILCSYEED NTNHDSSDGT HIDPAKGSHA SRMARTSVVP ATAYSSSEDS LSQDVIAIVE KSMKTHADNL MRFLEGLSTR
101: LSQLELYCYN LDKSIGAMQS DLTCDHEETD SKLKSLDKHL QEVHRSVLIL RDKQELAETR KELAKLKHVR KESSSSSHLQ SNEERSSPSS MDPKRIDNVS
201: DTQNQELALA LPHQVAPRQQ PVASSYQVPA PNVSQATQRP HYYLMPTHLP NPQAVTQLPQ NQYLPSDPQY RIPLSTSSSQ VIQSPPVQQF SQYQQLQYQQ
301: QQWAPQLPPQ QVQVPPPQPP SAVSQVRPPS TNVYTPYATS QATNPLPTET LPNSVPMQMP YSGIPPQGSS SGGGGSDAMP YGYSGAGRTV PQQPLLQHMR
401: GSFSAQPGDV YGNSGTHTMR PPASSYNVYD GENARAHYPP EPSHYAQAGY PPTSASLHNP ASHNLMVPSP SQSQFIRSHP YNDLIEKFVS MGFRGNHVAS
501: IIQRMEETQQ PIDFNSVHDR LNVHNPQRGW SG

Best Arabidopsis Sequence Match ( AT4G28300.1 )
(BLAST)

001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW

Arabidopsis Description

Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.