Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0023g03180.t01 | |
| VIT_07s0141g00280.t01 | |
| VIT_13s0019g02230.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH55962 | Soybean | nucleus | 62.91 | 46.57 |
| Solyc07g053990.2.1 | Tomato | nucleus | 72.19 | 21.89 |
| CDX89188 | Canola | nucleus | 64.24 | 20.64 |
| PGSC0003DMT400047245 | Potato | nucleus | 72.85 | 20.48 |
| Bra026268.1-P | Field mustard | nucleus | 64.24 | 20.38 |
| AT4G28300.1 | Thale cress | nucleus | 66.89 | 20.36 |
| CDY18985 | Canola | nucleus | 64.24 | 20.25 |
| PGSC0003DMT400034191 | Potato | nucleus | 72.85 | 20.07 |
| Solyc10g008340.2.1 | Tomato | extracellular | 72.19 | 20.0 |
| CDX97433 | Canola | nucleus | 64.24 | 19.72 |
| CDY25250 | Canola | nucleus | 64.24 | 19.72 |
| Bra010376.1-P | Field mustard | nucleus | 59.6 | 18.33 |
| Bra024211.1-P | Field mustard | nucleus | 58.94 | 18.28 |
| CDY29896 | Canola | nucleus | 58.94 | 18.28 |
| CDY14248 | Canola | nucleus | 58.94 | 18.13 |
| CDY67879 | Canola | nucleus | 55.63 | 17.57 |
| KRH25575 | Soybean | nucleus | 59.6 | 16.85 |
| KRH22387 | Soybean | nucleus | 52.98 | 14.9 |
| KRH26948 | Soybean | nucleus | 52.32 | 14.85 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 44.37 | 14.05 |
| Zm00001d012728_P001 | Maize | nucleus | 48.34 | 12.5 |
| Os01t0754500-01 | Rice | nucleus | 47.68 | 12.12 |
| EES03625 | Sorghum | nucleus | 46.36 | 11.93 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 39.07 | 11.92 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 45.7 | 11.44 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 45.7 | 11.39 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 45.03 | 11.22 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 44.37 | 11.11 |
| Os05t0561600-01 | Rice | plastid | 35.1 | 10.23 |
| Zm00001d038998_P001 | Maize | plastid | 35.1 | 10.11 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 34.44 | 9.85 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 34.44 | 9.83 |
| OQU78421 | Sorghum | plastid | 33.77 | 9.83 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 33.77 | 9.6 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 33.77 | 9.6 |
| TraesCS3A01G272000.1 | Wheat | plastid | 32.45 | 9.21 |
| TraesCS3B01G305700.1 | Wheat | plastid | 32.45 | 9.14 |
| TraesCS3D01G271600.1 | Wheat | plastid | 32.45 | 9.14 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 29.14 | 8.43 |
| Zm00001d043906_P002 | Maize | nucleus | 30.46 | 8.38 |
| EES03419 | Sorghum | nucleus | 29.14 | 8.18 |
| Zm00001d011562_P003 | Maize | plastid | 29.14 | 7.61 |
| VIT_14s0066g00800.t01 | Wine grape | nucleus | 22.52 | 6.04 |
| VIT_17s0000g08970.t01 | Wine grape | nucleus | 17.22 | 5.54 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 15.89 | 5.27 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 0.0 | 0.0 |
| KRH55961 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_12s0028g03740 | EMBL:AM432914 | EMBL:FN595235 | EnsemblPlants:VIT_12s0028g03740.t01 | EnsemblPlantsGene:VIT_12s0028g03740 | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF3 | ProteinID:CAN71577 | ProteinID:CAN71577.1 | ProteinID:CBI21851 | ProteinID:CBI21851.3 | SEG:seg |
| UniParc:UPI0001BE1D66 | UniProt:E0CTD6 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr12:-:4613767..4622720
Molecular Weight (calculated)
16697.2 Da
IEP (calculated)
5.265
GRAVY (calculated)
-0.762
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSSGRAG SGSKGFDFAS DDILCSYDEF SNQESSNGTH SDPASGKDFH KARMSRSSLF PASNVYGQQE ESSLNQEMIS TVEKTVKKYA DNLMRFLEGI
101: SSRLSQLELY CYNLDKSIGE MRSDLVRDHG EADSKLKSLD KHIQEVSQCR S
101: SSRLSQLELY CYNLDKSIGE MRSDLVRDHG EADSKLKSLD KHIQEVSQCR S
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.