Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra009045.1-P | |
| Bra013826.1-P | |
| Bra017054.1-P | |
| Bra031892.1-P | |
| Bra036832.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89188 | Canola | nucleus | 95.59 | 96.81 |
| AT4G28300.1 | Thale cress | nucleus | 80.88 | 77.62 |
| Bra024211.1-P | Field mustard | nucleus | 79.2 | 77.41 |
| Bra010376.1-P | Field mustard | nucleus | 78.78 | 76.37 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 20.38 | 64.24 |
| KRH55962 | Soybean | nucleus | 26.26 | 61.27 |
| Solyc07g053990.2.1 | Tomato | nucleus | 49.37 | 47.19 |
| PGSC0003DMT400047245 | Potato | nucleus | 50.0 | 44.32 |
| Solyc10g008340.2.1 | Tomato | extracellular | 50.42 | 44.04 |
| KRH25575 | Soybean | nucleus | 48.95 | 43.63 |
| PGSC0003DMT400034191 | Potato | nucleus | 49.79 | 43.25 |
| KRH26948 | Soybean | nucleus | 42.65 | 38.16 |
| KRH22387 | Soybean | nucleus | 41.81 | 37.06 |
| KRH55961 | Soybean | cytosol | 21.01 | 36.63 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 35.5 | 35.43 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 24.37 | 33.14 |
| Zm00001d012728_P001 | Maize | nucleus | 38.24 | 31.16 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 39.29 | 30.86 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 31.93 | 30.71 |
| EES03625 | Sorghum | nucleus | 37.6 | 30.49 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 38.45 | 30.35 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 38.24 | 30.03 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 38.03 | 30.02 |
| Os01t0754500-01 | Rice | nucleus | 37.4 | 29.97 |
| Os05t0561600-01 | Rice | plastid | 25.63 | 23.55 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 26.05 | 23.35 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 25.63 | 23.06 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 25.21 | 22.73 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 25.0 | 22.41 |
| OQU78421 | Sorghum | plastid | 24.16 | 22.16 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 23.53 | 21.46 |
| TraesCS3D01G271600.1 | Wheat | plastid | 24.16 | 21.46 |
| TraesCS3B01G305700.1 | Wheat | plastid | 23.95 | 21.27 |
| Zm00001d038998_P001 | Maize | plastid | 23.32 | 21.18 |
| TraesCS3A01G272000.1 | Wheat | plastid | 23.53 | 21.05 |
| EES03419 | Sorghum | nucleus | 23.74 | 21.0 |
| Zm00001d043906_P002 | Maize | nucleus | 24.16 | 20.95 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 19.54 | 20.44 |
| Bra023474.1-P | Field mustard | nucleus | 22.9 | 20.34 |
| Zm00001d011562_P003 | Maize | plastid | 22.48 | 18.51 |
Protein Annotations
Description
AT4G28300 (E=1e-141) | hydroxyproline-rich glycoprotein family protein
Coordinates
chrA01:+:10293025..10294608
Molecular Weight (calculated)
52381.9 Da
IEP (calculated)
6.275
GRAVY (calculated)
-0.933
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MASDRVNSGS KGFDFGSDDI LCSYDDFANQ EDSSNGPNSD PAIAANKEFH KTRMARSSVF PTSSYTPPDD SLSQDIINAT VERTMKKYSD NVMRFLEGIS
101: SRLSQLELYC YNLDKTIGEM RSELSRDNEE ADVKLRSMDK HLQEVHRSVQ ILRDKQELFD TQKELARLQL VQKDSSSSSH GEERVATPVP EPKKIENTSD
201: AHNKQLALAL PHQLAPQPQP QHQHQQQYYM PPTSQLQNTP APAPVPAPPA QAQFMPPPPA PSHPSSAQPQ SFPQYQQNWP PQPQARPQSS GAYPTYSLAP
301: PSNQSPVEPL PSSMQMQSPY PGPPQQSMQA YGYGAPPPQA PQQTKMSYNP QTGDGYLPAG PPPPPGYANA MYESGRMQYP PPQPHQQQHA HYMQGPQGGG
401: YAPQQHQAGG GSTGTPSPVM RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNAL LDRLSAQSSG GPPRGW
101: SRLSQLELYC YNLDKTIGEM RSELSRDNEE ADVKLRSMDK HLQEVHRSVQ ILRDKQELFD TQKELARLQL VQKDSSSSSH GEERVATPVP EPKKIENTSD
201: AHNKQLALAL PHQLAPQPQP QHQHQQQYYM PPTSQLQNTP APAPVPAPPA QAQFMPPPPA PSHPSSAQPQ SFPQYQQNWP PQPQARPQSS GAYPTYSLAP
301: PSNQSPVEPL PSSMQMQSPY PGPPQQSMQA YGYGAPPPQA PQQTKMSYNP QTGDGYLPAG PPPPPGYANA MYESGRMQYP PPQPHQQQHA HYMQGPQGGG
401: YAPQQHQAGG GSTGTPSPVM RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNAL LDRLSAQSSG GPPRGW
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.