Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g008340.2.1 | Tomato | extracellular | 89.23 | 89.72 |
| PGSC0003DMT400047245 | Potato | nucleus | 74.82 | 76.35 |
| VIT_12s0028g03740.t01 | Wine grape | nucleus | 20.07 | 72.85 |
| KRH55962 | Soybean | nucleus | 24.09 | 64.71 |
| KRH25575 | Soybean | nucleus | 51.82 | 53.18 |
| AT4G28300.1 | Thale cress | nucleus | 47.81 | 52.82 |
| Bra026268.1-P | Field mustard | nucleus | 43.25 | 49.79 |
| CDX89188 | Canola | nucleus | 42.52 | 49.57 |
| CDY18985 | Canola | nucleus | 43.25 | 49.48 |
| VIT_12s0028g03730.t01 | Wine grape | nucleus | 31.57 | 49.43 |
| CDY29896 | Canola | nucleus | 43.61 | 49.08 |
| Bra024211.1-P | Field mustard | nucleus | 43.61 | 49.08 |
| CDY67879 | Canola | nucleus | 42.7 | 48.95 |
| KRH55961 | Soybean | cytosol | 23.91 | 47.99 |
| CDY25250 | Canola | nucleus | 42.7 | 47.56 |
| CDX97433 | Canola | nucleus | 42.7 | 47.56 |
| CDY14248 | Canola | nucleus | 42.34 | 47.25 |
| Bra010376.1-P | Field mustard | nucleus | 41.79 | 46.64 |
| KRH26948 | Soybean | nucleus | 44.89 | 46.24 |
| KRH22387 | Soybean | nucleus | 43.61 | 44.51 |
| GSMUA_Achr4P07980_001 | Banana | nucleus | 32.66 | 37.53 |
| Zm00001d012728_P001 | Maize | nucleus | 37.96 | 35.62 |
| EES03625 | Sorghum | nucleus | 37.59 | 35.09 |
| Os01t0754500-01 | Rice | nucleus | 37.59 | 34.68 |
| GSMUA_Achr4P15050_001 | Banana | nucleus | 30.66 | 33.94 |
| HORVU3Hr1G072520.1 | Barley | nucleus | 35.95 | 32.67 |
| TraesCS3A01G292800.1 | Wheat | nucleus | 35.77 | 32.34 |
| TraesCS3D01G292600.1 | Wheat | nucleus | 35.58 | 32.18 |
| TraesCS3B01G327600.1 | Wheat | nucleus | 35.04 | 31.84 |
| Os05t0561600-01 | Rice | plastid | 26.82 | 28.38 |
| TraesCS1A01G394400.1 | Wheat | nucleus | 26.09 | 27.03 |
| TraesCS1D01G402000.1 | Wheat | nucleus | 26.09 | 26.93 |
| HORVU1Hr1G086930.4 | Barley | nucleus | 26.09 | 26.93 |
| OQU78421 | Sorghum | plastid | 24.64 | 26.01 |
| TraesCS1B01G422400.1 | Wheat | nucleus | 24.27 | 25.19 |
| Zm00001d038998_P001 | Maize | plastid | 23.91 | 25.0 |
| Zm00001d009555_P003 | Maize | endoplasmic reticulum, vacuole | 23.54 | 24.71 |
| Os01t0672800-01 | Rice | cytosol, nucleus | 20.26 | 24.4 |
| PGSC0003DMT400032802 | Potato | nucleus | 22.99 | 23.2 |
| Zm00001d043906_P002 | Maize | nucleus | 22.63 | 22.59 |
| TraesCS3B01G305700.1 | Wheat | plastid | 22.08 | 22.57 |
| TraesCS3D01G271600.1 | Wheat | plastid | 21.72 | 22.2 |
| TraesCS3A01G272000.1 | Wheat | plastid | 21.35 | 21.99 |
| EES03419 | Sorghum | nucleus | 21.53 | 21.93 |
| Zm00001d011562_P003 | Maize | plastid | 21.72 | 20.59 |
| PGSC0003DMT400072130 | Potato | nucleus | 17.7 | 18.65 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034191 | EnsemblPlantsGene:PGSC0003DMG400013142 | EntrezGene:102588898 | InterPro:DUF1421 | ncoils:Coil | PANTHER:PTHR31805 |
| PANTHER:PTHR31805:SF3 | PFAM:PF07223 | PGSC:PGSC0003DMG400013142 | RefSeq:XP_006367642.1 | SEG:seg | UniParc:UPI000294DF03 |
| UniProt:M1B096 | MapMan:35.2 | : | : | : | : |
Description
Hydroxyproline-rich glycoprotein family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013142]
Coordinates
chr10:-:3829292..3833892
Molecular Weight (calculated)
60401.0 Da
IEP (calculated)
6.408
GRAVY (calculated)
-0.962
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSSGRPS NSSGSKGFDF GSDDILCSYE DYPHQDASNG THSDPAIATN SAKEFHKNRM TRSSMFPTST YSPPEESSFN QDMICTVEKT MKKYTDNLMR
101: FLEGISSRLS QLELYCYNLD KSIGEMRSDL VRDHGEADLK LKALEKHVQE VHRSVQILRD KQELAETQKE LAKLQFAQKE PASANNSQQN EDRNAQPVSD
201: SNKGDNSTDV NGQELALALP HQVAPRAPLT NQPVEQPQQA PPQPIPSQSM TQSQGYYLPP VQMSNPPAPT HLSQGQYLSS DPQYRTSQMQ DLSRLPPQPA
301: APPGNQTPQI QSMPQYQQQQ WTQQVPQQIQ ASQQVQQHQL PTVQQQGRPS SPAVYPSYPP NQPNPSPEPV PNSMPMQMSY SAIPQSVACR PEAIPYGYDR
401: SGRPLQSQPP TQHLKPSFGA PGDGYATSGP HPSLSAGNAY LMYDGEGPRG HPSQPPNFPQ SGYPPSSFPP QNAQSSPSPN HMVRPPQLMR THPYNELIEK
501: LASMGYRGDH VVNVIQRLEE SGQTVDFNTV LDRLNGHSSG GPQRGWSG
101: FLEGISSRLS QLELYCYNLD KSIGEMRSDL VRDHGEADLK LKALEKHVQE VHRSVQILRD KQELAETQKE LAKLQFAQKE PASANNSQQN EDRNAQPVSD
201: SNKGDNSTDV NGQELALALP HQVAPRAPLT NQPVEQPQQA PPQPIPSQSM TQSQGYYLPP VQMSNPPAPT HLSQGQYLSS DPQYRTSQMQ DLSRLPPQPA
301: APPGNQTPQI QSMPQYQQQQ WTQQVPQQIQ ASQQVQQHQL PTVQQQGRPS SPAVYPSYPP NQPNPSPEPV PNSMPMQMSY SAIPQSVACR PEAIPYGYDR
401: SGRPLQSQPP TQHLKPSFGA PGDGYATSGP HPSLSAGNAY LMYDGEGPRG HPSQPPNFPQ SGYPPSSFPP QNAQSSPSPN HMVRPPQLMR THPYNELIEK
501: LASMGYRGDH VVNVIQRLEE SGQTVDFNTV LDRLNGHSSG GPQRGWSG
001: MASGSSGRVN SGSKGFDFGS DDILCSYDDY TNQDSSNGPH SDPAIAASNS NKEFHKTRMA RSSVFPTSSY SPPEDSLSQD ITDTVERTMK MYADNMMRFL
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
101: EGLSSRLSQL ELYCYNLDKT IGEMRSELTH AHEDADVKLR SLDKHLQEVH RSVQILRDKQ ELADTQKELA KLQLVQKESS SSSHSQHGED RVATPVPEPK
201: KSENTSDAHN QQLALALPHQ IAPQPQVQPQ PQPQQHQYYM PPPPTQLQNT PAPVPVSTPP SQLQAPPAQS QFMPPPPAPS HPSSAQTQSF PQYQQNWPPQ
301: PQARPQSSGG YPTYSPAPPG NQPPVESLPS SMQMQSPYSG PPQQSMQAYG YGAAPPPQAP PQQTKMSYSP QTGDGYLPSG PPPPSGYANA MYEGGRMQYP
401: PPQPQQQQQQ AHYLQGPQGG GYSPQPHQAG GGNIGAPPVL RSKYGELIEK LVSMGFRGDH VMAVIQRMEE SGQPIDFNTL LDRLSGQSSG GPPRGW
Arabidopsis Description
Formin-like protein (DUF1421) [Source:UniProtKB/TrEMBL;Acc:Q8VZR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.