Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 78.8 | 81.57 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 78.6 | 81.2 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 77.8 | 80.37 |
| Zm00001d029300_P001 | Maize | mitochondrion | 72.2 | 78.99 |
| OQU92533 | Sorghum | nucleus | 77.8 | 78.74 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 77.8 | 78.59 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 77.8 | 78.59 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 78.0 | 75.14 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 25.6 | 70.72 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 25.6 | 70.72 |
| Zm00001d048919_P001 | Maize | cytosol | 25.0 | 69.06 |
| GSMUA_Achr11P... | Banana | nucleus | 48.4 | 47.92 |
| Os07t0634300-01 | Rice | mitochondrion | 24.2 | 46.9 |
| Bra012912.1-P | Field mustard | nucleus | 41.6 | 43.15 |
| CDY02100 | Canola | nucleus | 41.2 | 42.74 |
| CDY23025 | Canola | nucleus | 41.0 | 42.53 |
| KRH56853 | Soybean | nucleus | 44.4 | 42.45 |
| KRH03095 | Soybean | nucleus | 44.4 | 42.29 |
| Solyc04g081030.2.1 | Tomato | nucleus | 42.8 | 41.39 |
| AT3G49990.1 | Thale cress | nucleus | 41.0 | 40.84 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 43.0 | 39.74 |
| PGSC0003DMT400009516 | Potato | nucleus | 42.6 | 33.6 |
Protein Annotations
| MapMan:17.1.3.2.2.1 | EntrezGene:4332942 | ProteinID:AAO62333.1 | ProteinID:ABF96194.1 | ProteinID:BAF12120.1 | ProteinID:BAS84375.1 |
| ncoils:Coil | ProteinID:EAZ27083.1 | GO:GO:0000056 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0030688 | GO:GO:0031902 | GO:GO:0034448 | GO:GO:0042274 | InterPro:LTV |
| EnsemblPlantsGene:Os03g0372700 | EnsemblPlants:Os03t0372700-02 | PFAM:PF04180 | PANTHER:PTHR21531 | UniProt:Q84TS4 | UniParc:UPI00000026F4 |
| RefSeq:XP_015627808.1 | RefSeq:XP_015627809.1 | SEG:seg | : | : | : |
Description
Similar to low temperature viability protein. (Os03t0372700-01);Low temperature viability protein family protein. (Os03t0372700-02)
Coordinates
chr3:+:14670795..14674931
Molecular Weight (calculated)
55495.7 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.881
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGGGGRK PRNFATFRLF PRAGAADPND RVFVRVDSND YTVPGFGDDD AFDSSSLSLT GDAAAGDHFS SASGPLPDHV RREILELGLP DDGYNYLHHL
101: RELRPSAAAA ASSFAPNQTA PPLPLDVKAY DASRVRIASG NVEDEMDEGR TMCKVAAKTA PVRRIERAVD PDIARLLDET DVSHGGSEDE GLEEDFVIMA
201: NRAEGDEEED DDDEEEEVMD GVFLSDVEEE EEFEDDEGEP KPRVRRLLDE QFDLLALEEY GDSDDDDDDP GVRNGECELP TEVIDELKLF HSQNVSVTEE
301: YRTPADFVRR KLDSSTAEEV DESANVIQKC AEYAERYLNE TAEEEEVVLV SESSDESEVW DCETIVSTYS NLDNHPGKIQ TPGNPKNRLP KVFPGETATT
401: KDIIRLQGKE RLPVEYLPQR KRNGEKEKKA KPTETPSAES FKKGAQKETK EEKKARKAAV KEEKREARKA KKELKGLYKF ETQKAQKVAA VTGPASIRLM
101: RELRPSAAAA ASSFAPNQTA PPLPLDVKAY DASRVRIASG NVEDEMDEGR TMCKVAAKTA PVRRIERAVD PDIARLLDET DVSHGGSEDE GLEEDFVIMA
201: NRAEGDEEED DDDEEEEVMD GVFLSDVEEE EEFEDDEGEP KPRVRRLLDE QFDLLALEEY GDSDDDDDDP GVRNGECELP TEVIDELKLF HSQNVSVTEE
301: YRTPADFVRR KLDSSTAEEV DESANVIQKC AEYAERYLNE TAEEEEVVLV SESSDESEVW DCETIVSTYS NLDNHPGKIQ TPGNPKNRLP KVFPGETATT
401: KDIIRLQGKE RLPVEYLPQR KRNGEKEKKA KPTETPSAES FKKGAQKETK EEKKARKAAV KEEKREARKA KKELKGLYKF ETQKAQKVAA VTGPASIRLM
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.