CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56853	Soybean	nucleus	89.33	89.67
VIT_18s0001g13560.t01	Wine grape	nucleus	57.14	55.45
Solyc04g081030.2.1	Tomato	nucleus	51.62	52.42
GSMUA_Achr11P...	Banana	nucleus	49.52	51.49
Bra012912.1-P	Field mustard	nucleus	47.24	51.45
CDY23025	Canola	nucleus	47.24	51.45
CDY02100	Canola	nucleus	46.86	51.04
AT3G49990.1	Thale cress	nucleus	47.05	49.2
Zm00001d029300_P001	Maize	mitochondrion	40.57	46.61
OQU92533	Sorghum	nucleus	42.48	45.14
Zm00001d047407_P001	Maize	cytosol, mitochondrion, nucleus, plastid	42.1	44.65
Zm00001d047404_P001	Maize	cytosol, mitochondrion, nucleus, plastid	42.1	44.65
Os03t0372700-02	Rice	cytosol	42.29	44.4
TraesCS5B01G256200.1	Wheat	mitochondrion	40.57	44.01
TraesCS5D01G265300.1	Wheat	mitochondrion	40.38	43.89
TraesCS5A01G256700.1	Wheat	mitochondrion	40.38	43.8
PGSC0003DMT400009516	Potato	nucleus	51.43	42.59
HORVU5Hr1G071840.1	Barley	nucleus	40.76	41.23
Zm00001d030362_P001	Maize	cytosol, mitochondrion	13.14	38.12
Zm00001d048919_P001	Maize	cytosol	13.14	38.12
Zm00001d021590_P001	Maize	cytosol, mitochondrion	13.14	38.12
Os07t0634300-01	Rice	mitochondrion	17.71	36.05
TraesCS2B01G178500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	16.38	32.21
EER99764	Sorghum	mitochondrion	23.24	31.04
TraesCS2A01G153400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	15.43	29.78
Zm00001d022252_P001	Maize	mitochondrion, nucleus	22.29	29.62
TraesCS2D01G158700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	15.43	29.56

Protein Annotations

EntrezGene:100793853	MapMan:17.1.3.2.2.1	EMBL:ACUP02010335	ncoils:Coil	EnsemblPlantsGene:GLYMA_17G076700	GO:GO:0000056
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005768
GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0030688	GO:GO:0031902
GO:GO:0034448	GO:GO:0042274	UniProt:I1MT49	EnsemblPlants:KRH03095	ProteinID:KRH03095	ProteinID:KRH03095.1
InterPro:LTV	PFAM:PF04180	PANTHER:PTHR21531	UniParc:UPI000233EF1D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr17:+:5997186..6000542

Molecular Weight (calculated)

58580.0 Da

IEP (calculated)

4.412

GRAVY (calculated)

-0.910

Length

525 amino acids

Sequence
(BLAST)

001: MGGRKKKFID KKNSATFQLI ARDTSDPSFS QSDRVFVRVD NNPVSFPVAD DSAFDDSPDD YYYDDGGGGV SGGPLPEGVR REILELGFPD DGYNYLNHLR
101: EIKNTGAGAA FFHNPKFKLQ HLPRDVKAYD ASRLQISEAD GEAVENTIYS VASKTTSVRV QKAVDPEVAA LLDDDDLSRL GSDVEDLEED FVVQANLLEE
201: EDEEDEEKDP ICNETSFSEE SAIHRNGNNA HTLQVSSCSR VTDDSGPLDG VTDGVPGEDC VGEKPGARRL LDEQFDLLEH QEYGTDDDDD GGDYYENYQA
301: DEDESLAEKL KHSLKNHVMD DLELDGKYKV PSDLLKNKEA PHEEQEDFAA DVIRRCKEYA EGYEVEDDNK DVVLVEESSD ESEVWDCETI VSTYSNLDNH
401: PGKIEAPGVA RKKKLAETVS AALSSSSQII SLRGKEKLPV DFLPGGRKPA TEKVKDQSIA KTEQYKRKQH GLESKEEKKE RKAAVKEERR EARRNKKEMK
501: ELYKCEAHRA QRAAAVSGPS SIHLL

Best Arabidopsis Sequence Match ( AT3G49990.1 )
(BLAST)

001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK

Arabidopsis Description

At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.