Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02100 | Canola | nucleus | 95.44 | 95.44 |
| AT3G49990.1 | Thale cress | nucleus | 71.58 | 68.73 |
| KRH03095 | Soybean | nucleus | 51.45 | 47.24 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 52.7 | 46.95 |
| KRH56853 | Soybean | nucleus | 50.83 | 46.85 |
| Solyc04g081030.2.1 | Tomato | nucleus | 49.59 | 46.23 |
| Zm00001d029300_P001 | Maize | mitochondrion | 41.49 | 43.76 |
| GSMUA_Achr11P... | Banana | nucleus | 45.64 | 43.56 |
| OQU92533 | Sorghum | nucleus | 43.98 | 42.91 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.78 | 42.63 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.78 | 42.63 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 42.32 | 42.15 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 42.32 | 42.15 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 42.12 | 42.03 |
| Os03t0372700-02 | Rice | cytosol | 43.15 | 41.6 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 42.74 | 39.69 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 14.32 | 38.12 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 14.32 | 38.12 |
| Zm00001d048919_P001 | Maize | cytosol | 14.32 | 38.12 |
| PGSC0003DMT400009516 | Potato | nucleus | 49.79 | 37.85 |
| Os07t0634300-01 | Rice | mitochondrion | 18.67 | 34.88 |
| TraesCS2B01G178500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.8 | 30.34 |
| TraesCS2A01G153400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.18 | 28.68 |
| EER99764 | Sorghum | mitochondrion | 22.2 | 27.23 |
| TraesCS2D01G158700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 15.15 | 26.64 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 21.37 | 26.08 |
Protein Annotations
Description
AT3G49990 (E=3e-144) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Low temperature viability protein (InterPro:IPR007307); Has 1404 Blast hits to 1163 proteins in 173 species: Archae - 5; Bacteria - 61; Metazoa - 489; Fungi - 146; Plants - 69; Viruses - 17; Other Eukaryotes - 617 (source: NCBI BLink).
Coordinates
chrA03:-:21548997..21550445
Molecular Weight (calculated)
53837.0 Da
IEP (calculated)
4.365
GRAVY (calculated)
-0.912
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKFIDKK KAATFELCPR DTSDPLYSDA PGGDKIFLRV DQNPVNINGF AEDNSQFDDA PEEGEEDLAY GYSSFAGSSS NNPLPADVRK EILELGYPDD
101: GYNYLDHLRE IKNTGGGSNF YANPKFEGEY LPRDVKAYDA SRVKVSGVVV DGDGGEDDKL MYSVASKTVN VKVKKAIDPE VAALLEDSDG SEFGSDVEDL
201: EEDFVVRANL AEEGEGCSGV SNEEEFARPP VAAENNPRVP RQIDELFDQL ELNEYGSESD YDGEEEEDFK AQSVGDLIYE KPKDYELDEK YMNPADLLKN
301: SDSAKDKEEL EYIIRRSVQY GENLVNSNED EFVEVVEESS DESEKWDCET IVTTYSNLDN HPGLICDPER ARKKLSEALA KAKSLNGGGS RIITLQGKEK
401: LPVEFLPGRR AEQTSVKPKA EPVKRKTHGQ ETKEEKKERK AAVKTEKREA RKMKKETKEL YRFETQRAQK AVAVSGPSSI PL
101: GYNYLDHLRE IKNTGGGSNF YANPKFEGEY LPRDVKAYDA SRVKVSGVVV DGDGGEDDKL MYSVASKTVN VKVKKAIDPE VAALLEDSDG SEFGSDVEDL
201: EEDFVVRANL AEEGEGCSGV SNEEEFARPP VAAENNPRVP RQIDELFDQL ELNEYGSESD YDGEEEEDFK AQSVGDLIYE KPKDYELDEK YMNPADLLKN
301: SDSAKDKEEL EYIIRRSVQY GENLVNSNED EFVEVVEESS DESEKWDCET IVTTYSNLDN HPGLICDPER ARKKLSEALA KAKSLNGGGS RIITLQGKEK
401: LPVEFLPGRR AEQTSVKPKA EPVKRKTHGQ ETKEEKKERK AAVKTEKREA RKMKKETKEL YRFETQRAQK AVAVSGPSSI PL
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.