Factsheet for Zm00001d029300_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030362_P001	Maize	cytosol, mitochondrion	34.35	86.74
Zm00001d021590_P001	Maize	cytosol, mitochondrion	34.35	86.74
OQU92533	Sorghum	nucleus	91.47	84.62
Zm00001d047407_P001	Maize	cytosol, mitochondrion, nucleus, plastid	91.47	84.44
Zm00001d047404_P001	Maize	cytosol, mitochondrion, nucleus, plastid	91.47	84.44
Zm00001d048919_P001	Maize	cytosol	33.26	83.98
Os03t0372700-02	Rice	cytosol	78.99	72.2
TraesCS5B01G256200.1	Wheat	mitochondrion	74.84	70.66
TraesCS5A01G256700.1	Wheat	mitochondrion	74.62	70.45
TraesCS5D01G265300.1	Wheat	mitochondrion	74.4	70.39
HORVU5Hr1G071840.1	Barley	nucleus	73.74	64.93
GSMUA_Achr11P...	Banana	nucleus	50.77	45.94
CDY02100	Canola	nucleus	44.2	41.91
Bra012912.1-P	Field mustard	nucleus	43.76	41.49
CDY23025	Canola	nucleus	43.54	41.29
KRH56853	Soybean	nucleus	46.61	40.73
KRH03095	Soybean	nucleus	46.61	40.57
VIT_18s0001g13560.t01	Wine grape	nucleus	47.92	40.48
Solyc04g081030.2.1	Tomato	nucleus	44.42	39.27
Zm00001d022252_P001	Maize	mitochondrion, nucleus	33.04	38.23
AT3G49990.1	Thale cress	nucleus	41.58	37.85
PGSC0003DMT400009516	Potato	nucleus	44.2	31.86

Protein Annotations

EnsemblPlants:Zm00001d029300_P001	EnsemblPlants:Zm00001d029300_T001	EnsemblPlantsGene:Zm00001d029300	InterPro:LTV	ncoils:Coil	PANTHER:PTHR21531
PFAM:PF04180	ProteinID:ONL98417.1	SEG:seg	UniParc:UPI00097CD94A	UniProt:A0A1R3LQ15	MapMan:17.1.3.2.2.1

Description

Low temperature viability protein

Coordinates

chr1:+:65439370..65443562

Molecular Weight (calculated)

50870.7 Da

IEP (calculated)

4.317

GRAVY (calculated)

-0.738

Length

457 amino acids

Sequence
(BLAST)

001: MGGGGGGRKA RNFATFRLFP RAGAADPNDR VFVRVDNNDY TVPGFADEDS FDPSFGDGNF HSASGPLPEH VRREILELGL PDDGYNYLSH LRELRPAAVA
101: ASSFVPSSTA RPEPVPLDVK AYDASRVRVG PSEGELDEGK TMCKVAAKTA PVRRIEKAVD PDVARLLDES DVSHVGSEDE GLEEDFVIIA NQAEGEEFEE
201: DDIEGMEEWN GVLSDVEEEE FDFDEDEPKP RVRRLLDEQF DLLALEEYGD SDDDGGVVKG GEYELPSEAL DELKLFQNQN VSVDEEYRTP ADFVRQKLDS
301: SAADEVDESA CVIKKCSEYA ERYFNETAED VVVLVSESSD ESEVWDCETI VSTFSNLDNH PGKIETPGIH RKRLPRVFPG ETTTTNDIIK LHGKEKLPVE
401: YLPQRRRNGE KEKKAAVKEE KREARKAKKE LKGLYKSETQ KAQKVAAVTG PSSIRLM

Best Arabidopsis Sequence Match ( AT3G49990.1 )
(BLAST)

001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK

Arabidopsis Description

At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.