Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g081030.2.1 | Tomato | nucleus | 78.23 | 95.94 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 44.95 | 52.68 |
| KRH56853 | Soybean | nucleus | 42.59 | 51.63 |
| KRH03095 | Soybean | nucleus | 42.59 | 51.43 |
| CDY23025 | Canola | nucleus | 38.49 | 50.62 |
| CDY02100 | Canola | nucleus | 38.33 | 50.41 |
| GSMUA_Achr11P... | Banana | nucleus | 40.06 | 50.3 |
| Bra012912.1-P | Field mustard | nucleus | 37.85 | 49.79 |
| AT3G49990.1 | Thale cress | nucleus | 36.75 | 46.41 |
| Zm00001d029300_P001 | Maize | mitochondrion | 31.86 | 44.2 |
| OQU92533 | Sorghum | nucleus | 33.44 | 42.91 |
| Os03t0372700-02 | Rice | cytosol | 33.6 | 42.6 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 32.49 | 42.56 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 32.49 | 42.56 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 32.18 | 42.24 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 32.97 | 42.22 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 32.97 | 42.22 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 32.97 | 40.27 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 11.04 | 38.67 |
| Zm00001d048919_P001 | Maize | cytosol | 11.04 | 38.67 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 11.04 | 38.67 |
| Os07t0634300-01 | Rice | mitochondrion | 14.35 | 35.27 |
| TraesCS2B01G178500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 13.41 | 31.84 |
| EER99764 | Sorghum | mitochondrion | 17.98 | 29.01 |
| TraesCS2A01G153400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 12.15 | 28.31 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 17.51 | 28.1 |
| TraesCS2D01G158700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 11.83 | 27.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400009516 | EnsemblPlantsGene:PGSC0003DMG400003712 | EntrezGene:102583152 | InterPro:LTV | ncoils:Coil | PANTHER:PTHR21531 |
| PFAM:PF04180 | PGSC:PGSC0003DMG400003712 | SEG:seg | UniParc:UPI000296290D | UniProt:M0ZWE6 | MapMan:17.1.3.2.2.1 |
Description
Low temperature viability protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003712]
Coordinates
chr4:+:70458536..70463348
Molecular Weight (calculated)
71448.7 Da
IEP (calculated)
4.540
GRAVY (calculated)
-0.744
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKFIDKK KSATFQLFAC DSSDPAYESG SSGADRVFVR VDNNTSYSVD AFHSADQFNP DDPNSIYADA PEDEEEYNGW AAGYSGTGNQ TVLLPDDVRK
101: EILELGFPDD GYNYLHHLRE IKNTGGGSAY YENPKAKFNE LPRDVKAYDA SRVAVAKVDD DSNEKYVYNV AAKTVGVRVQ KAVDPEVAAL LDDSDLSRFG
201: SDEEDLELEE DFVITANLPD EADTVELDKN LSLLERSDVD KLGSNDTAGH VQRNEAKFAS IEEKPRARRP LDEQFDMRQS KPPFACLTVV IACKIYYYTD
301: TTSDTCTNGM FSAEIELKYS FFDKAKLELE EYGSDTEEEY DGDMIEENEC HESLAEKLNH AFKECAIDGL ELNNYGPDNA ELLEPEADVI NRCREYAEKY
401: ENEGPEEEAA IFDESSSDSE VWDCETIVST YSNLDNHPGK IVAPEARRKK LLPAISEASP IISLKGKANL PVDYLPSKGK HALLKEDKKK QGSEKEGKDN
501: SMKEQLKRKQ HGQESKEEKK ERKAAVKEER REARRMKKET KELYKCEAQR AQKVAAFTGP SAIHLIFVSL NSGRSPVSPW FCKSDGKVSD IILVVYFKVK
601: AFAAVVDPLL HPKWELLVDT FFNYQDDVRK LFYS
101: EILELGFPDD GYNYLHHLRE IKNTGGGSAY YENPKAKFNE LPRDVKAYDA SRVAVAKVDD DSNEKYVYNV AAKTVGVRVQ KAVDPEVAAL LDDSDLSRFG
201: SDEEDLELEE DFVITANLPD EADTVELDKN LSLLERSDVD KLGSNDTAGH VQRNEAKFAS IEEKPRARRP LDEQFDMRQS KPPFACLTVV IACKIYYYTD
301: TTSDTCTNGM FSAEIELKYS FFDKAKLELE EYGSDTEEEY DGDMIEENEC HESLAEKLNH AFKECAIDGL ELNNYGPDNA ELLEPEADVI NRCREYAEKY
401: ENEGPEEEAA IFDESSSDSE VWDCETIVST YSNLDNHPGK IVAPEARRKK LLPAISEASP IISLKGKANL PVDYLPSKGK HALLKEDKKK QGSEKEGKDN
501: SMKEQLKRKQ HGQESKEEKK ERKAAVKEER REARRMKKET KELYKCEAQR AQKVAAFTGP SAIHLIFVSL NSGRSPVSPW FCKSDGKVSD IILVVYFKVK
601: AFAAVVDPLL HPKWELLVDT FFNYQDDVRK LFYS
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.