Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d029300_P001 | Maize | mitochondrion | 45.94 | 50.77 |
| KRH03095 | Soybean | nucleus | 51.49 | 49.52 |
| Solyc04g081030.2.1 | Tomato | nucleus | 50.49 | 49.32 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 47.92 | 48.89 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 47.92 | 48.89 |
| OQU92533 | Sorghum | nucleus | 47.72 | 48.79 |
| Os03t0372700-02 | Rice | cytosol | 47.92 | 48.4 |
| KRH56853 | Soybean | nucleus | 50.1 | 48.37 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 46.14 | 48.14 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 51.49 | 48.06 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 45.94 | 48.03 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 45.94 | 47.93 |
| CDY02100 | Canola | nucleus | 44.36 | 46.47 |
| CDY23025 | Canola | nucleus | 44.16 | 46.27 |
| Bra012912.1-P | Field mustard | nucleus | 43.56 | 45.64 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 45.94 | 44.7 |
| AT3G49990.1 | Thale cress | nucleus | 43.96 | 44.22 |
| PGSC0003DMT400009516 | Potato | nucleus | 50.3 | 40.06 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 13.66 | 38.12 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 13.66 | 38.12 |
| Zm00001d048919_P001 | Maize | cytosol | 13.47 | 37.57 |
| Os07t0634300-01 | Rice | mitochondrion | 17.62 | 34.5 |
| TraesCS2B01G178500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 17.03 | 32.21 |
| TraesCS2A01G153400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.24 | 30.15 |
| EER99764 | Sorghum | mitochondrion | 22.18 | 28.5 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 21.98 | 28.1 |
| TraesCS2D01G158700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 14.85 | 27.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P00440_001 | EnsemblPlants:GSMUA_Achr11T00440_001 | EnsemblPlantsGene:GSMUA_Achr11G00440_001 | InterPro:LTV | ncoils:Coil | PANTHER:PTHR21531 |
| PFAM:PF04180 | SEG:seg | UniParc:UPI000295ADDF | UniProt:M0RN75 | MapMan:17.1.3.2.2.1 | : |
Description
Putative Protein LTV1 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr11G00440_001]
Coordinates
chr11:+:263073..267902
Molecular Weight (calculated)
57439.5 Da
IEP (calculated)
4.674
GRAVY (calculated)
-1.002
Length
505 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKKFIDK KKSATFHLLA RDTASCPASS SADGEPTTDR VFVRVDNNPF PCPDFLGDDD DDYGRGRCDP DDDPNARATR FGKEGLLPDR MRNEILELGL
101: PDDGYNYLVH LREIKNAGGG SSYFHNPKAK LDRLQLDVKA YDASRLRIDS EVRDDTDREM VHAVALNTRA VKVQKAVDPD VLRLLDDSDL SRFGSDVEDL
201: EEDFVVKANL PEGDEEKTDE VEQEGEEEQE DAAAEPEQNV KRVLRSDEKP RVRRLLDEQF DLLTLREYDD DSDSDDVPYI DTERELLNSK LHDALKEFAL
301: DDLELQGKYG VPGSTKHGHQ EEANGTEVDE SAEVIRKCAE YAERYLNESE YDEMVFVEES SDESETWDCE TIVSTYSNLD NHPGRIQAPE NPERRLPRIF
401: PGDSTAKNNV IALRGKAKLP VDYLPNKRRT AEKVKTSVVL SSEKPKRRPH SQESKEEKKE RKAAIKEERR EARKAKKELR GLYKFEAQRA QKVVAVSGPS
501: SMRIM
101: PDDGYNYLVH LREIKNAGGG SSYFHNPKAK LDRLQLDVKA YDASRLRIDS EVRDDTDREM VHAVALNTRA VKVQKAVDPD VLRLLDDSDL SRFGSDVEDL
201: EEDFVVKANL PEGDEEKTDE VEQEGEEEQE DAAAEPEQNV KRVLRSDEKP RVRRLLDEQF DLLTLREYDD DSDSDDVPYI DTERELLNSK LHDALKEFAL
301: DDLELQGKYG VPGSTKHGHQ EEANGTEVDE SAEVIRKCAE YAERYLNESE YDEMVFVEES SDESETWDCE TIVSTYSNLD NHPGRIQAPE NPERRLPRIF
401: PGDSTAKNNV IALRGKAKLP VDYLPNKRRT AEKVKTSVVL SSEKPKRRPH SQESKEEKKE RKAAIKEERR EARKAKKELR GLYKFEAQRA QKVVAVSGPS
501: SMRIM
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.