Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23025 | Canola | nucleus | 69.52 | 72.41 |
| Bra012912.1-P | Field mustard | nucleus | 68.73 | 71.58 |
| CDY02100 | Canola | nucleus | 68.53 | 71.37 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 52.19 | 48.43 |
| KRH03095 | Soybean | nucleus | 49.2 | 47.05 |
| KRH56853 | Soybean | nucleus | 49.0 | 47.04 |
| Solyc04g081030.2.1 | Tomato | nucleus | 46.61 | 45.26 |
| GSMUA_Achr11P... | Banana | nucleus | 44.22 | 43.96 |
| Zm00001d029300_P001 | Maize | mitochondrion | 37.85 | 41.58 |
| Os03t0372700-02 | Rice | cytosol | 40.84 | 41.0 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 39.44 | 40.99 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 39.44 | 40.91 |
| OQU92533 | Sorghum | nucleus | 40.24 | 40.89 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 39.24 | 40.7 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 39.64 | 40.2 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 39.64 | 40.2 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 39.84 | 38.54 |
| PGSC0003DMT400009516 | Potato | nucleus | 46.41 | 36.75 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 13.15 | 36.46 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 13.15 | 36.46 |
| Zm00001d048919_P001 | Maize | cytosol | 12.95 | 35.91 |
| Os07t0634300-01 | Rice | mitochondrion | 18.33 | 35.66 |
| TraesCS2B01G178500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 15.54 | 29.21 |
| TraesCS2A01G153400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 14.94 | 27.57 |
| TraesCS2D01G158700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 14.34 | 26.28 |
| EER99764 | Sorghum | mitochondrion | 20.52 | 26.21 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 20.12 | 25.57 |
Protein Annotations
| MapMan:17.1.3.2.2.1 | EntrezGene:824161 | ProteinID:AEE78614.1 | EMBL:AK117321 | ArrayExpress:AT3G49990 | EnsemblPlantsGene:AT3G49990 |
| RefSeq:AT3G49990 | TAIR:AT3G49990 | RefSeq:AT3G49990-TAIR-G | EnsemblPlants:AT3G49990.1 | TAIR:AT3G49990.1 | Unigene:At.28036 |
| EMBL:BT005885 | ProteinID:CAB62107.1 | ncoils:Coil | GO:GO:0000056 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0030688 | GO:GO:0031902 | GO:GO:0034448 | GO:GO:0042274 |
| InterPro:LTV | RefSeq:NP_190568.1 | PFAM:PF04180 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR21531 | UniProt:Q9SN19 |
| UniParc:UPI0000060D8D | SEG:seg | : | : | : | : |
Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
Coordinates
chr3:-:18532301..18534415
Molecular Weight (calculated)
56476.8 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.975
Length
502 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.