Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 100.0 | 100.0 |
| OQU92533 | Sorghum | nucleus | 91.31 | 91.5 |
| Zm00001d029300_P001 | Maize | mitochondrion | 84.44 | 91.47 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 31.72 | 86.74 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 31.72 | 86.74 |
| Zm00001d048919_P001 | Maize | cytosol | 30.91 | 84.53 |
| Os03t0372700-02 | Rice | cytosol | 78.59 | 77.8 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 72.73 | 74.38 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 72.32 | 74.12 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 72.32 | 73.97 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 71.72 | 68.4 |
| GSMUA_Achr11P... | Banana | nucleus | 48.89 | 47.92 |
| CDY02100 | Canola | nucleus | 42.83 | 43.98 |
| Bra012912.1-P | Field mustard | nucleus | 42.63 | 43.78 |
| CDY23025 | Canola | nucleus | 42.22 | 43.36 |
| KRH56853 | Soybean | nucleus | 44.85 | 42.45 |
| KRH03095 | Soybean | nucleus | 44.65 | 42.1 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 45.45 | 41.59 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 32.12 | 40.25 |
| Solyc04g081030.2.1 | Tomato | nucleus | 42.02 | 40.23 |
| AT3G49990.1 | Thale cress | nucleus | 40.2 | 39.64 |
| PGSC0003DMT400009516 | Potato | nucleus | 42.22 | 32.97 |
Protein Annotations
| EMBL:EU964148 | EnsemblPlants:Zm00001d047407_P001 | EnsemblPlants:Zm00001d047407_T001 | EnsemblPlantsGene:Zm00001d047407 | EntrezGene:100283285 | InterPro:LTV |
| ncoils:Coil | PANTHER:PTHR21531 | PFAM:PF04180 | ProteinID:AQL06352.1 | ProteinID:AQL06355.1 | SEG:seg |
| UniParc:UPI000182E3EF | UniProt:B6TGN3 | MapMan:17.1.3.2.2.1 | : | : | : |
Description
Low temperature viability protein
Coordinates
chr9:-:129140043..129148064
Molecular Weight (calculated)
55097.7 Da
IEP (calculated)
4.379
GRAVY (calculated)
-0.815
Length
495 amino acids
Sequence
(BLAST)
(BLAST)
001: MGARGGGGGG RKARNFATFR LFPRAGAADP NDRVFVRVDN NDYTVPGFAD EDSFDPSRSD PSAGNGNFGS ASGPLPEHVR REILELGLPD DGYNYLSHLR
101: ELRPAAAAAS SFVPSSTGRP EPLPLDVKAY DASRVRIGLS EGELDEGKTM CKVAAKTAPV RRIEKAVDPD IARLLDESDV SHVGSEDEGL EEDFVIIANQ
201: AEEEEEDEDG DMEEKQEWNG VFSDVEEEEF DFEEDEPKPR VRRLLDEQFD LLALEEYGDS DDDDMGVKGG EYELPNEAID ELKLFQNQNV CVDEEYRTPA
301: DFVRQKLDSS MADEVDESAR VIKKCAEYAE IYLNETAEEE VVVLVSESSD ESEVWDCETI VSTFSNLDNH PGTIETPGIS RARFPRVFPG ETTTTNGIIK
401: LHGKEKLPVE YLPQRRRNGE KEKKVKPVEA SVTDKFKKGA EKETKEEKKA RKAAVKEEKR EARKAKKELK GLYKSETQKA QKVAAVTGPS SIRLM
101: ELRPAAAAAS SFVPSSTGRP EPLPLDVKAY DASRVRIGLS EGELDEGKTM CKVAAKTAPV RRIEKAVDPD IARLLDESDV SHVGSEDEGL EEDFVIIANQ
201: AEEEEEDEDG DMEEKQEWNG VFSDVEEEEF DFEEDEPKPR VRRLLDEQFD LLALEEYGDS DDDDMGVKGG EYELPNEAID ELKLFQNQNV CVDEEYRTPA
301: DFVRQKLDSS MADEVDESAR VIKKCAEYAE IYLNETAEEE VVVLVSESSD ESEVWDCETI VSTFSNLDNH PGTIETPGIS RARFPRVFPG ETTTTNGIIK
401: LHGKEKLPVE YLPQRRRNGE KEKKVKPVEA SVTDKFKKGA EKETKEEKKA RKAAVKEEKR EARKAKKELK GLYKSETQKA QKVAAVTGPS SIRLM
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.