Factsheet for Zm00001d022252_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99764	Sorghum	mitochondrion	77.97	78.37
Os07t0634300-01	Rice	mitochondrion	34.68	53.1
TraesCS2B01G178500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.38	44.94
Zm00001d030362_P001	Maize	cytosol, mitochondrion	20.51	44.75
Zm00001d021590_P001	Maize	cytosol, mitochondrion	20.51	44.75
Zm00001d048919_P001	Maize	cytosol	20.0	43.65
TraesCS2A01G153400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.11	42.28
TraesCS2D01G158700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.11	41.97
Zm00001d029300_P001	Maize	mitochondrion	38.23	33.04
Zm00001d047407_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.25	32.12
Zm00001d047404_P001	Maize	cytosol, mitochondrion, nucleus, plastid	40.25	32.12
KRH56853	Soybean	nucleus	29.62	22.37
KRH03095	Soybean	nucleus	29.62	22.29
GSMUA_Achr11P...	Banana	nucleus	28.1	21.98
CDY02100	Canola	nucleus	26.33	21.58
Bra012912.1-P	Field mustard	nucleus	26.08	21.37
CDY23025	Canola	nucleus	26.08	21.37
VIT_18s0001g13560.t01	Wine grape	nucleus	29.11	21.26
Solyc04g081030.2.1	Tomato	nucleus	27.34	20.89
AT3G49990.1	Thale cress	nucleus	25.57	20.12
PGSC0003DMT400009516	Potato	nucleus	28.1	17.51

Protein Annotations

EMBL:BT055217	EnsemblPlants:Zm00001d022252_P001	EnsemblPlants:Zm00001d022252_T001	EnsemblPlantsGene:Zm00001d022252	InterPro:LTV	PANTHER:PTHR21531
ProteinID:ONM59955.1	SEG:seg	UniParc:UPI0001917751	UniProt:B8A0X5	MapMan:17.1.3.2.2.1	:

Description

Low temperature viability protein

Coordinates

chr7:-:173656309..173658781

Molecular Weight (calculated)

42572.8 Da

IEP (calculated)

4.419

GRAVY (calculated)

-0.694

Length

395 amino acids

Sequence
(BLAST)

001: MGRGRNRKPR NFATFRLCPR PGAADASERV FVRVDDNPYS VPGFADDDGL SSSTAVRGDG GEPDPSSSTS TDEGGSPLPE HVRREIMELG LPDDGYDYLA
101: HLRELRPSLS STGGGGSSAV FLPSRRLARS GLPVDVKAYD FTSTPLGSGE VAVVAASRAE EAIDLDVTRL LDGSDSTAVE SGDEDLEEDF VILANEPDEK
201: QESEEENVAG SKEKALQLPG DQFVSLAFEE YADSGVGCCV QDAKHELSQE VTDKLKPPHS ETFDADKRCR APTPQYVAHR ILESNEQIDA SSNAISEHVQ
301: YAETYEVSEE EQAILAPESS KGSAVMYSTA TVSGSYLDVK LKFPKHSPGE TSMKKSIIRK GIEKLPAGYS PQRNTPTGET KQGPYKGTRQ EGTES

Best Arabidopsis Sequence Match ( AT3G49990.1 )
(BLAST)

001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK

Arabidopsis Description

At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.