Factsheet for VIT_18s0001g13560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56853	Soybean	nucleus	55.64	57.55
KRH03095	Soybean	nucleus	55.45	57.14
Solyc04g081030.2.1	Tomato	nucleus	52.87	55.32
CDY23025	Canola	nucleus	47.69	53.53
CDY02100	Canola	nucleus	47.13	52.9
Bra012912.1-P	Field mustard	nucleus	46.95	52.7
AT3G49990.1	Thale cress	nucleus	48.43	52.19
GSMUA_Achr11P...	Banana	nucleus	48.06	51.49
Zm00001d029300_P001	Maize	mitochondrion	40.48	47.92
OQU92533	Sorghum	nucleus	41.77	45.75
Zm00001d047407_P001	Maize	cytosol, mitochondrion, nucleus, plastid	41.59	45.45
Zm00001d047404_P001	Maize	cytosol, mitochondrion, nucleus, plastid	41.59	45.45
PGSC0003DMT400009516	Potato	nucleus	52.68	44.95
TraesCS5D01G265300.1	Wheat	mitochondrion	40.11	44.93
TraesCS5A01G256700.1	Wheat	mitochondrion	40.11	44.83
TraesCS5B01G256200.1	Wheat	mitochondrion	40.11	44.83
Os03t0372700-02	Rice	cytosol	39.74	43.0
HORVU5Hr1G071840.1	Barley	nucleus	40.3	42.0
Zm00001d030362_P001	Maize	cytosol, mitochondrion	13.49	40.33
Zm00001d021590_P001	Maize	cytosol, mitochondrion	13.49	40.33
Zm00001d048919_P001	Maize	cytosol	13.31	39.78
Os07t0634300-01	Rice	mitochondrion	17.19	36.05
TraesCS2B01G178500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	16.08	32.58
EER99764	Sorghum	mitochondrion	23.29	32.06
Zm00001d022252_P001	Maize	mitochondrion, nucleus	21.26	29.11
TraesCS2A01G153400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	14.42	28.68
TraesCS2D01G158700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	14.05	27.74

Protein Annotations

EntrezGene:100247237	MapMan:17.1.3.2.2.1	ProteinID:CCB45999	ProteinID:CCB45999.1	ncoils:Coil	UniProt:F6GZQ7
EMBL:FN595227	GO:GO:0000056	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005768	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0030688	GO:GO:0031902	GO:GO:0034448	GO:GO:0042274	InterPro:LTV	PFAM:PF04180
PANTHER:PTHR21531	UniParc:UPI00021097E2	ArrayExpress:VIT_18s0001g13560	EnsemblPlantsGene:VIT_18s0001g13560	EnsemblPlants:VIT_18s0001g13560.t01	RefSeq:XP_010664762.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:11577367..11581885

Molecular Weight (calculated)

60734.7 Da

IEP (calculated)

4.577

GRAVY (calculated)

-0.950

Length

541 amino acids

Sequence
(BLAST)

001: MGKKKFIDKK KSATFQLLAR DSSDPNYQDS PGHDRVFIRV DNNPYSVDGI FHESDDLSGP SHYADDPDSI FADAPDDDND GEEDDRVFGK QSSSQLSIGA
101: TAAAVPLPDH VRREILELGF PDDGYNYLTH LREIKNTGGG SAFYHNSKAR LDQLPLDVKG YDASRVHIGD VKRDPDEKAL YSVAEKTVGV RLQKAVDPEV
201: AALLDSKDSV FGSDVEDLEE DFVIQANIHE EGKDDFIGKK LTKEDVDESY TQEPQEDPVE FVGHDEIRNQ FVGAGDDIII SEEPRVHRLL DEQFDQLERM
301: EYGTESDDDY GGSVAEDYES LADKLNHALK DHATDDLELN EKYRVPADLL HDKEGLKDSG SLDSSADVIR RCVEYAEKYE NEDPNEDVVV LEESSDESGG
401: WDCETIVSTY SNLDNHPGKI EAPEITRKKK LVETVSGPLS ATNHVIPLRG KEKLPVDFLP RGKKPSTEKA KDVSSLRAEQ QKRKKHGQEE KKEKKERKTA
501: VKEERREARR VKKETKEMYK SETQRAQRVA AISGPSSIHL S

Best Arabidopsis Sequence Match ( AT3G49990.1 )
(BLAST)

001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK

Arabidopsis Description

At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.