CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022252_P001	Maize	mitochondrion, nucleus	78.37	77.97
Os07t0634300-01	Rice	mitochondrion	35.11	53.49
TraesCS2B01G178500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.52	43.45
TraesCS2D01G158700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.01	41.61
TraesCS2A01G153400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.24	40.81
OQU92533	Sorghum	nucleus	42.75	34.01
KRH56853	Soybean	nucleus	31.3	23.52
VIT_18s0001g13560.t01	Wine grape	nucleus	32.06	23.29
KRH03095	Soybean	nucleus	31.04	23.24
CDY02100	Canola	nucleus	27.48	22.41
Bra012912.1-P	Field mustard	nucleus	27.23	22.2
CDY23025	Canola	nucleus	27.23	22.2
GSMUA_Achr11P...	Banana	nucleus	28.5	22.18
Solyc04g081030.2.1	Tomato	nucleus	28.5	21.66
AT3G49990.1	Thale cress	nucleus	26.21	20.52
PGSC0003DMT400009516	Potato	nucleus	29.01	17.98

Protein Annotations

MapMan:17.1.3.2.2.1	EntrezGene:8079378	UniProt:C5X2M8	ProteinID:EER97589.2	EnsemblPlants:EER99764	ProteinID:EER99764
ProteinID:EER99764.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:LTV	PANTHER:PTHR21531	EnsemblPlantsGene:SORBI_3002G388200	unigene:Sbi.20739	UniParc:UPI0001A83FA5
RefSeq:XP_002463243.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:74196239..74199499

Molecular Weight (calculated)

42358.7 Da

IEP (calculated)

4.316

GRAVY (calculated)

-0.617

Length

393 amino acids

Sequence
(BLAST)

001: MGRGRNRKPR NFATFRLCPR PGVADASDRV FVRVDDNPYS VPGFADDEGH SSSTAVGADG GEPAASSSAS VDDDGAPLPE HVRREILELG LPDDGYDYLT
101: HLRELRPSLS STGGGGSSAV FLPSRRPARS GPCVDVKAYD FTRTPLGSGK VAVVTASRAE EAIDLDVARL LDGRDSPAVE SGDEDLEEDF VILANEPDEE
201: LIEEESAAGG KEKALQLPRK QFDSLAFEEY ADSGDDCHVQ DAKHELSQDV TNKLKSPHSE NFDADKNCWA AAAQYVAHGI LESEEQIDTS SNAMPECVGY
301: AGTYEVSEEE QVILAPESSE GSAVMYSTTT VSGSYLDVKM QFPKLSPGET SMKKSIIRKG IEKLPTAYLP QRNTLSGQKL GPYKEPKEEG TES

Best Arabidopsis Sequence Match ( AT3G49990.1 )
(BLAST)

001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK

Arabidopsis Description

At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.