Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012912.1-P | Field mustard | nucleus | 95.44 | 95.44 |
| CDY23025 | Canola | nucleus | 90.66 | 90.66 |
| AT3G49990.1 | Thale cress | nucleus | 71.37 | 68.53 |
| VIT_18s0001g13560.t01 | Wine grape | nucleus | 52.9 | 47.13 |
| KRH03095 | Soybean | nucleus | 51.04 | 46.86 |
| Solyc04g081030.2.1 | Tomato | nucleus | 50.21 | 46.81 |
| KRH56853 | Soybean | nucleus | 50.62 | 46.65 |
| GSMUA_Achr11P... | Banana | nucleus | 46.47 | 44.36 |
| Zm00001d029300_P001 | Maize | mitochondrion | 41.91 | 44.2 |
| OQU92533 | Sorghum | nucleus | 44.19 | 43.12 |
| Zm00001d047407_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.98 | 42.83 |
| Zm00001d047404_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 43.98 | 42.83 |
| TraesCS5A01G256700.1 | Wheat | mitochondrion | 41.7 | 41.53 |
| TraesCS5B01G256200.1 | Wheat | mitochondrion | 41.7 | 41.53 |
| TraesCS5D01G265300.1 | Wheat | mitochondrion | 41.49 | 41.41 |
| Os03t0372700-02 | Rice | cytosol | 42.74 | 41.2 |
| HORVU5Hr1G071840.1 | Barley | nucleus | 42.12 | 39.11 |
| PGSC0003DMT400009516 | Potato | nucleus | 50.41 | 38.33 |
| Zm00001d030362_P001 | Maize | cytosol, mitochondrion | 14.32 | 38.12 |
| Zm00001d048919_P001 | Maize | cytosol | 14.32 | 38.12 |
| Zm00001d021590_P001 | Maize | cytosol, mitochondrion | 14.32 | 38.12 |
| Os07t0634300-01 | Rice | mitochondrion | 18.67 | 34.88 |
| TraesCS2B01G178500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 17.22 | 31.09 |
| TraesCS2A01G153400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 16.18 | 28.68 |
| EER99764 | Sorghum | mitochondrion | 22.41 | 27.48 |
| TraesCS2D01G158700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 15.15 | 26.64 |
| Zm00001d022252_P001 | Maize | mitochondrion, nucleus | 21.58 | 26.33 |
Protein Annotations
| EnsemblPlants:CDY02100 | EnsemblPlantsGene:GSBRNA2T00113482001 | InterPro:LTV | ncoils:Coil | PANTHER:PTHR21531 | PFAM:PF04180 |
| ProteinID:CDY02100 | ProteinID:CDY02100.1 | SEG:seg | UniParc:UPI0004EDC04E | MapMan:17.1.3.2.2.1 | : |
Description
BnaA03g40670D
Coordinates
chrLK031932:+:120780..122388
Molecular Weight (calculated)
54042.5 Da
IEP (calculated)
4.462
GRAVY (calculated)
-0.901
Length
482 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKKKFIDKK KAATFELCPR DTSDPLYSDA PGGDKIFLRV DQNPVNINGF AEDNSQFDDA PEEGEEDLAY GYSSFAGSSS NNPLPADVRK EILELGYPDD
101: GYNYLDHLRE IKNTGGGSNF YANPKFEGEY LPRDVKAYDA SRVKVSGVVV DGEDDKLMYS VASKTVNVKV KKAIDPEVAA LLEDSDGSEF GSDVEDLEED
201: FVVRANLAEE GEGCSGVSHK EEKVVEFARP PVAAENKPRV PRQIDELFDQ LELNEYGSES DYDGEEEEDF KAQSVGDLIY EKPKDYELDE KYMNPADLLK
301: NSDSAKDKEE LEYIIRRSVQ YGENLVNSNE DEFVEVVEES SDESEKWDCE TIVTTYSNLD NHPGLICDPE RARKKLSEAL AKAKSLNGGS RIITLQGKEK
401: LPVEFLPGRR AEQTSVKPKA EPVKRKTHGQ ETKEEKKERK AAVKTEKREA RKMKKETKEL YRFETQRAQK AVAVSGPSSI PL
101: GYNYLDHLRE IKNTGGGSNF YANPKFEGEY LPRDVKAYDA SRVKVSGVVV DGEDDKLMYS VASKTVNVKV KKAIDPEVAA LLEDSDGSEF GSDVEDLEED
201: FVVRANLAEE GEGCSGVSHK EEKVVEFARP PVAAENKPRV PRQIDELFDQ LELNEYGSES DYDGEEEEDF KAQSVGDLIY EKPKDYELDE KYMNPADLLK
301: NSDSAKDKEE LEYIIRRSVQ YGENLVNSNE DEFVEVVEES SDESEKWDCE TIVTTYSNLD NHPGLICDPE RARKKLSEAL AKAKSLNGGS RIITLQGKEK
401: LPVEFLPGRR AEQTSVKPKA EPVKRKTHGQ ETKEEKKERK AAVKTEKREA RKMKKETKEL YRFETQRAQK AVAVSGPSSI PL
001: MGKKKFIDKK KAATFELCPR DTSDPRYSDA PGGDKIFLRV DQNPVNINGF IEEDEEEEGD SSRFDDAPEE MDYGYSSFGD SSSSLPAHVR KEILELGYPD
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
101: DGYNYLEHLR EIKNTGGGSN FYVNPKYEVA QLPRDVKAYD ASRVKISGMV NEEGNDNKLM YSVASKTVNV KVQKAIDPEV AALLENSDGS EFGSDVEDLE
201: EDFVVQANLT QKGESSGVSN GELEFSVRRE VRERESDEPV AENPRVPRQI DELFDQLELN EYGSDSDGDG YIAEDGEEEE EEDFMAQEVQ NLIHGKAKDY
301: ELEEKYMNPA DILKNSDSVR DKEEVDTAAH VIRRTVEYGE NFDNGNEDEF VELTEESSDE SEKHDCETIV STYSNLDNLP GKILAAESAR QKKLSETLAN
401: ALSSNGRIIN LQGRERIPVE FLPGRRAEQT DVKAEIPKAE PIKRKTHGQE SKEEKKERKN AVKAEKREAR IIKKQTKMLY CGETQRAQRA VATSGPSSRP
501: LK
Arabidopsis Description
At3g49990 [Source:UniProtKB/TrEMBL;Acc:Q9SN19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.