Factsheet for Bra025176.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001423.1-P
Bra002050.1-P
Bra005088.1-P
Bra005290.1-P
Bra005297.1-P
Bra006369.1-P
Bra009117.1-P
Bra010520.1-P
Bra011367.1-P
Bra012553.1-P
Bra012912.1-P
Bra013385.1-P
Bra013565.1-P
Bra013824.1-P
Bra017105.1-P
Bra017340.1-P
Bra017408.1-P
Bra019213.1-P
Bra019727.1-P
Bra020966.1-P
Bra021158.1-P
Bra021945.1-P
Bra022999.1-P
Bra023056.1-P
Bra023192.1-P
Bra024702.1-P
Bra024999.1-P
Bra025176.1-P
Bra025513.1-P
Bra025599.1-P
Bra026274.1-P
Bra027194.1-P
Bra027946.1-P
Bra030030.1-P
Bra030221.1-P
Bra032422.1-P
Bra034807.1-P
Bra037049.1-P
Bra038682.1-P
Bra038753.1-P
Bra039922.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25980.1	Bra030030.1-P	AT1G24290.1	20706207
AT3G25980.1	Bra024702.1-P	AT1G26630.1	20706207
AT3G25980.1	Bra027946.1-P	AT1G56290.1	20706207
AT3G25980.1	Bra019727.1-P	AT1G62390.1	20706207
AT3G25980.1	Bra002050.1-P	AT2G17350.1	20706207
AT3G25980.1	Bra030221.1-P	AT2G22640.1	25262777
AT3G25980.1	Bra039922.1-P	AT2G22640.1	25262777
AT3G25980.1	Bra021945.1-P	AT2G35050.1	20706207
AT3G25980.1	Bra022999.1-P	AT2G35050.1	20706207
AT3G25980.1	Bra005297.1-P	AT2G36130.1	20706207
AT3G25980.1	Bra005290.1-P	AT2G36230.1	20706207
AT3G25980.1	Bra023056.1-P	AT2G36230.1	20706207
AT3G25980.1	Bra005088.1-P	AT2G38730.1	20706207
AT3G25980.1	Bra017105.1-P	AT2G38730.1	20706207
AT3G25980.1	Bra006369.1-P	AT3G11270.1	20706207
AT3G25980.1	Bra017408.1-P	AT3G11270.1	20706207
AT3G25980.1	Bra032422.1-P	AT3G11270.1	20706207
AT3G25980.1	Bra001423.1-P	AT3G11830.1	20706207
AT3G25980.1	Bra034807.1-P	AT3G11830.1	20706207
AT3G25980.1	Bra038682.1-P	AT3G11830.1	20706207
AT3G25980.1	Bra021158.1-P	AT3G16060.1	20706207
AT3G25980.1	Bra023192.1-P	AT3G16060.1	20706207
AT3G25980.1	Bra027194.1-P	AT3G16060.1	20706207
AT3G25980.1	Bra017340.1-P	AT3G25980.1	25262777
AT3G25980.1	Bra025176.1-P	AT3G25980.1	25262777
AT3G25980.1	Bra012912.1-P	AT3G49990.1	20706207
AT3G25980.1	Bra012553.1-P	AT4G19210.1	20706207
AT3G25980.1	Bra013385.1-P	AT4G19210.1	20706207
AT3G25980.1	Bra020966.1-P	AT4G19210.1	20706207
AT3G25980.1	Bra013565.1-P	AT4G21860.1	20706207
AT3G25980.1	Bra038753.1-P	AT4G21860.1	20706207
AT3G25980.1	Bra013824.1-P	AT4G24680.1	20706207
AT3G25980.1	Bra019213.1-P	AT4G24680.1	20706207
AT3G25980.1	Bra026274.1-P	AT4G28230.1	20706207
AT3G25980.1	Bra011367.1-P	AT4G32650.1	20706207
AT3G25980.1	Bra037049.1-P	AT4G32650.1	20706207
AT3G25980.1	Bra010520.1-P	AT4G35740.1	20706207
AT3G25980.1	Bra025599.1-P	AT4G38440.1	20706207
AT3G25980.1	Bra009117.1-P	AT5G05510.1	25262777
AT3G25980.1	Bra025513.1-P	AT5G41190.1	20706207
AT3G25980.1	Bra024999.1-P	AT5G46750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P21190_001	Banana	cytosol, nucleus, plastid	55.79	63.86
CDX83576	Canola	extracellular, golgi	69.47	47.14
Bra017340.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	72.63	33.01
AT3G25980.1	Thale cress	cytosol	70.53	32.06
VIT_01s0010g02430.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	69.47	31.88
KRG97470	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	69.47	31.88
KRH31421	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	69.47	31.88
PGSC0003DMT400045025	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	68.42	31.25
Os04t0486500-01	Rice	mitochondrion	67.37	30.92
Solyc05g014370.2.1	Tomato	mitochondrion	67.37	30.77
EES12410	Sorghum	mitochondrion	64.21	29.47
TraesCS2A01G320000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	62.11	28.5
TraesCS2B01G363300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.11	28.5
TraesCS2D01G343300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	62.11	28.5
Zm00001d025721_P001	Maize	mitochondrion	64.21	28.37
HORVU2Hr1G084050.1	Barley	plastid	62.11	21.69
Zm00001d003249_P001	Maize	mitochondrion	54.74	10.92
KRH08024	Soybean	cytosol	5.26	4.67

Protein Annotations

EnsemblPlants:Bra025176.1	EnsemblPlants:Bra025176.1-P	EnsemblPlantsGene:Bra025176	Gene3D:3.30.900.10	GO:GO:0007049	GO:GO:0007094
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:HORMA_dom_sf	InterPro:IPR036570	InterPro:Mad2
PANTHER:PTHR11842	PANTHER:PTHR11842:SF11	SUPFAM:SSF56019	UniParc:UPI000253F711	UniProt:M4E8S0	MapMan:35.1

Description

AT3G25980 (E=3e-024) | mitotic spindle checkpoint protein, putative (MAD2)

Coordinates

chrA06:-:22939064..22939506

Molecular Weight (calculated)

11245.7 Da

IEP (calculated)

5.620

GRAVY (calculated)

-0.162

Length

95 amino acids

Sequence
(BLAST)

1: MITLLEFRFH NVNLDFSGCR GRRVIKEIMR EIQVIMRQVC LMYVYTDTDV AVPFTWVESD PKLIANPQMV KLHAFDTKIH KVDTLVSDKN DEWDE

Best Arabidopsis Sequence Match ( AT3G25980.1 )
(BLAST)

001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE

Arabidopsis Description

MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.