Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
EES12410 | Sorghum | mitochondrion | 88.84 | 92.27 |
GSMUA_Achr6P21190_001 | Banana | cytosol, nucleus, plastid | 33.49 | 86.75 |
Os04t0486500-01 | Rice | mitochondrion | 82.79 | 85.99 |
VIT_01s0010g02430.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 79.07 | 82.13 |
KRH31421 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 79.07 | 82.13 |
KRG97470 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 79.07 | 82.13 |
TraesCS2A01G320000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 78.14 | 81.16 |
TraesCS2B01G363300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 77.67 | 80.68 |
Bra017340.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 78.14 | 80.38 |
CDY39177 | Canola | cytosol | 78.14 | 80.38 |
CDY04187 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 78.14 | 80.38 |
PGSC0003DMT400045025 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 77.21 | 79.81 |
TraesCS2D01G343300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 76.74 | 79.71 |
Solyc05g014370.2.1 | Tomato | mitochondrion | 76.74 | 79.33 |
AT3G25980.1 | Thale cress | cytosol | 75.35 | 77.51 |
CDX83576 | Canola | extracellular, golgi | 48.37 | 74.29 |
KRH08024 | Soybean | cytosol | 34.88 | 70.09 |
Bra025176.1-P | Field mustard | cytosol | 28.37 | 64.21 |
HORVU2Hr1G084050.1 | Barley | plastid | 78.14 | 61.76 |
Zm00001d003249_P001 | Maize | mitochondrion | 75.35 | 34.03 |
Protein Annotations
MapMan:13.3.5.5.4 | Gene3D:3.30.900.10 | EntrezGene:542621 | UniProt:A0A1D6J8X0 | ProteinID:AQK44365.1 | GO:GO:0007049 |
GO:GO:0007094 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf |
InterPro:IPR003511 | InterPro:IPR036570 | InterPro:Mad2 | PFAM:PF02301 | PFscan:PS50815 | PANTHER:PTHR11842 |
PANTHER:PTHR11842:SF11 | SUPFAM:SSF56019 | UniParc:UPI000843752C | EnsemblPlantsGene:Zm00001d025721 | EnsemblPlants:Zm00001d025721_P001 | EnsemblPlants:Zm00001d025721_T001 |
Description
Mitotic spindle checkpoint protein MAD2
Coordinates
chr10:-:127518803..127520726
Molecular Weight (calculated)
24159.9 Da
IEP (calculated)
4.870
GRAVY (calculated)
-0.191
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MASRSASKDI ITLRGSAAIV SEFFGYAANR YGTLYSARQT AAVPVHPGLD RKVKKYGLTM LLTQDEGVKN FIASLTSQLS EWLEAGKLQR IVLVIMSKAT
101: SEVLERWNFN IVTDAEVVEK GAIKEKSDKE IMREIQAIMR QIASCITYLP CLDEPCVFDV LAYTDTDVDA PGTWVESDAK LIDNPQMVKL HSFDTKIHKV
201: DTLVSYKKDE WDEEE
101: SEVLERWNFN IVTDAEVVEK GAIKEKSDKE IMREIQAIMR QIASCITYLP CLDEPCVFDV LAYTDTDVDA PGTWVESDAK LIDNPQMVKL HSFDTKIHKV
201: DTLVSYKKDE WDEEE
001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
Arabidopsis Description
MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.