Factsheet for Solyc01g107160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090750.2.1
Solyc01g107160.2.1
Solyc02g089560.2.1
Solyc03g007130.2.1
Solyc03g043720.2.1
Solyc03g045060.2.1
Solyc05g014370.2.1
Solyc05g047520.2.1
Solyc05g056310.2.1
Solyc06g051040.2.1
Solyc06g065520.2.1
Solyc07g054690.1.1
Solyc09g009030.2.1
Solyc10g081990.1.1
Solyc10g085560.1.1
Solyc11g066160.1.1
Solyc11g072280.1.1
Solyc12g017860.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19590.1	Solyc03g045060.2.1	AT1G67210.1	20706207
AT3G19590.1	Solyc05g047520.2.1	AT2G06990.1	20706207
AT3G19590.1	Solyc12g017860.1.1	AT2G06990.1	20706207
AT3G19590.1	Solyc03g043720.2.1	AT2G22640.1	25262777
AT3G19590.1	Solyc11g066160.1.1	AT2G28740.1	20706207
AT3G19590.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT3G19590.1	Solyc01g107160.2.1	AT3G19590.1	25262777
AT3G19590.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT3G19590.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT3G19590.1	Solyc10g081990.1.1	AT4G10110.1	20706207
AT3G19590.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT3G19590.1	Solyc09g009030.2.1	AT5G03740.1	20706207
AT3G19590.1	Solyc10g085560.1.1	AT5G03740.1	20706207
AT3G19590.1	Solyc06g051040.2.1	AT5G05510.1	25262777
AT3G19590.1	Solyc02g089560.2.1	AT5G15980.1	20706207
AT3G19590.1	Solyc05g056310.2.1	AT5G26360.1	20706207
AT3G19590.1	Solyc03g007130.2.1	AT5G51600.1	20706207
AT3G19590.1	Solyc11g072280.1.1	AT5G51600.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400066160	Potato	extracellular	99.71	99.71
VIT_03s0091g00710.t01	Wine grape	cytosol	89.12	89.91
KRH35682	Soybean	nucleus	87.65	87.65
KRG91092	Soybean	nucleus	86.76	86.76
KRG91104	Soybean	nucleus	87.65	86.63
Bra038220.1-P	Field mustard	cytosol, plastid	83.82	83.82
CDX95434	Canola	cytosol, plastid	83.82	83.82
CDY42193	Canola	cytosol, plastid	83.82	83.82
Os03t0448600-01	Rice	cytosol	84.12	83.38
AT3G19590.1	Thale cress	cytosol	82.94	82.94
EER87819	Sorghum	cytosol	83.24	82.51
AT1G49910.1	Thale cress	cytosol	82.06	82.3
CDY59371	Canola	cytosol, plastid	82.06	82.3
Bra014226.1-P	Field mustard	cytosol, plastid	82.06	82.3
CDY03579	Canola	cytosol, plastid	82.06	82.06
TraesCS4A01G058600.1	Wheat	cytosol, plastid	83.24	82.03
TraesCS4D01G245500.2	Wheat	cytosol, plastid	82.94	81.74
TraesCS4B01G246100.1	Wheat	cytosol	68.53	75.9
HORVU4Hr1G067810.1	Barley	plastid	82.94	70.5
Os07t0588500-00	Rice	cytosol	70.88	66.21
KRH35672	Soybean	cytosol	25.29	65.65
TraesCS2A01G194000.1	Wheat	cytosol	64.41	63.29
TraesCS2D01G193800.1	Wheat	cytosol	63.53	63.16
TraesCS2B01G212800.1	Wheat	cytosol	63.82	62.54
Solyc05g012720.2.1	Tomato	nucleus	30.59	37.41
GSMUA_Achr4P03390_001	Banana	extracellular	44.12	35.46
Solyc10g047000.1.1	Tomato	nucleus	32.35	31.43

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000776	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043
GO:GO:0033597	GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:K4B2T3	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF24	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc01g107160.2	EnsemblPlants:Solyc01g107160.2.1	UniParc:UPI0002767AB2
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:94773913..94779889

Molecular Weight (calculated)

37749.1 Da

IEP (calculated)

8.198

GRAVY (calculated)

-0.524

Length

340 amino acids

Sequence
(BLAST)

001: MTAVSQSAGR ELENPPKDGI SNLRFSNHSD HLLVSSWDKT VRLYDASANA LRGEFMHGGA VLDCCFHDDS SGFSASADNT VRRLVFNSGR EDILGRHDAP
101: VRCIDYSYAT GQVITGSWDK TLKCWDPRGA SGQEHTLVGT YTQPERVYSL SLVGNRLVVA TAGRHVNVYD LRNMNQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSES GQSKKYAFKC HRKSEAGRDI VYPVNAIAFH PIYGTFATGG CDGYVNVWDG NNKKRLYQYP KYPSSVAALS FSRDGKLLAV
301: ASSYTFEEGE KPHEPDAIFV RSVNEVEVKP KPKVLPNPTS

Best Arabidopsis Sequence Match ( AT3G19590.1 )
(BLAST)

001: MTTVTPSAGR ELSNPPSDGI SNLRFSNNSD HLLVSSWDKR VRLYDVSTNS LKGEFLHGGA VLDCCFHDDF SGFSVGADYK VRRIVFNVGK EDILGTHDKA
101: VRCVEYSYAA GQVITGSWDK TVKCWDPRGA SGPERTQVGT YLQPERVYSM SLVGHRLVVA TAGRHVNIYD LRNMSQPEQR RESSLKYQTR CVRCYPNGTG
201: YALSSVEGRV AMEFFDLSEA AQAKKYAFKC HRKSEAGRDI VYPVNSIAFH PIYGTFATGG CDGFVNIWDG NNKKRLYQYS KYPTSISALS FSRDGQLLAV
301: ASSYTFEEGE KSQEPEAIFV RSVNEIEVKP KPKVYPNPAA

Arabidopsis Description

BUB3.1BUB3.1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.