Factsheet for Solyc05g012720.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g090750.2.1
Solyc01g097300.2.1
Solyc02g081170.2.1
Solyc03g097180.2.1
Solyc04g040110.2.1
Solyc05g053390.2.1
Solyc05g056310.2.1
Solyc06g019170.2.1
Solyc06g043160.1.1
Solyc06g065520.2.1
Solyc06g082630.2.1
Solyc06g082660.2.1
Solyc07g008880.2.1
Solyc08g022210.2.1
Solyc08g043170.2.1
Solyc08g065620.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	Solyc01g097300.2.1	AT1G08780.1	20706207
AT1G69400.1	Solyc03g097180.2.1	AT1G65020.1	20706207
AT1G69400.1	Solyc08g022210.2.1	AT2G05830.1	20706207
AT1G69400.1	Solyc06g019170.2.1	AT2G39800.1	20706207
AT1G69400.1	Solyc08g043170.2.1	AT2G39800.1	20706207
AT1G69400.1	Solyc04g040110.2.1	AT3G10180.1	20706207
AT1G69400.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT1G69400.1	Solyc01g090750.2.1	AT3G20050.1	20706207
AT1G69400.1	Solyc02g081170.2.1	AT4G04020.1	20706207
AT1G69400.1	Solyc06g043160.1.1	AT4G38780.1	20706207
AT1G69400.1	Solyc07g008880.2.1	AT4G38780.1	20706207
AT1G69400.1	Solyc05g056310.2.1	AT5G26360.1	20706207
AT1G69400.1	Solyc05g053390.2.1	AT5G49510.1	20706207
AT1G69400.1	Solyc06g082630.2.1	AT5G58290.1	20706207
AT1G69400.1	Solyc06g082660.2.1	AT5G58290.1	20706207
AT1G69400.1	Solyc08g065620.1.1	ATMG00070.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072830	Potato	cytosol	85.25	72.92
KRH74957	Soybean	cytosol	53.24	44.85
VIT_01s0113g00430.t01	Wine grape	cytosol	52.52	44.65
KRH70829	Soybean	cytosol	51.44	43.33
GSMUA_Achr9P09460_001	Banana	cytosol	47.84	41.05
CDY28548	Canola	cytosol	43.17	38.1
CDY44065	Canola	cytosol	42.81	37.78
AT1G69400.1	Thale cress	cytosol	41.37	36.62
HORVU5Hr1G096830.5	Barley	mitochondrion	39.57	34.16
TraesCS5B01G401600.1	Wheat	mitochondrion	39.57	34.16
OQU90950	Sorghum	mitochondrion	39.57	34.06
Zm00001d034081_P002	Maize	cytosol, mitochondrion	36.69	33.89
TraesCS5A01G396600.1	Wheat	mitochondrion	39.21	33.85
TraesCS5D01G406300.1	Wheat	mitochondrion	38.85	33.54
Solyc01g107160.2.1	Tomato	nucleus	37.41	30.59
Bra038307.1-P	Field mustard	plastid	39.57	29.1
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	24.1	22.79
Solyc10g047000.1.1	Tomato	nucleus	25.54	20.29

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007049
GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	GO:GO:0033597
GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BXZ4
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF17
SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc05g012720.2	EnsemblPlants:Solyc05g012720.2.1	UniParc:UPI00027658C3	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

Mitotic checkpoint protein BUB3.3 [Source:Projected from Arabidopsis thaliana (AT1G69400) UniProtKB/Swiss-Prot;Acc:F4I241]

Coordinates

chr5:+:5901332..5905739

Molecular Weight (calculated)

30956.1 Da

IEP (calculated)

5.346

GRAVY (calculated)

-0.368

Length

278 amino acids

Sequence
(BLAST)

001: MNTFSLNLAD PIRDAISRIR FAPHSNNLLI SSWDSSLRLY DVDSSKLRME APGEAELLDC CFENERVCFS AATDGSVNRY DLDSGIKVSL GNHDDSATCV
101: EYSAETCQII TAGWDKKINF WDARSTQSHG CLRSFVSEDL LLDQLMGELF WSTSPNPAHM RGQYAFRCHP KVKDGRRHVV TVNDIAFNPS IIGSFVTGDN
201: DGYATLWDAR GKKRIFEMSR YPNSVVSLSY SHDGLLLAVA SSYSYQEANE KEVPPQIFIH EIGNCDLTSP SSGASNKK

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.