Factsheet for Solyc03g097180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	golgi

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008203	Potato	mitochondrion	95.61	95.61
VIT_16s0039g01660.t01	Wine grape	endoplasmic reticulum, extracellular	63.01	62.42
KRH77782	Soybean	endoplasmic reticulum	61.13	60.56
KRH27693	Soybean	endoplasmic reticulum, extracellular	60.5	59.94
AT1G65020.1	Thale cress	extracellular, vacuole	59.56	59.56
Bra022499.1-P	Field mustard	endoplasmic reticulum, vacuole	57.37	57.37
Bra004108.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	57.05	57.05
CDY07441	Canola	cytosol	56.43	56.43
CDY39295	Canola	endoplasmic reticulum	56.11	55.94
CDX91528	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.72	55.74
CDY16384	Canola	endoplasmic reticulum, extracellular	57.37	55.62
TraesCS1D01G198400.1	Wheat	endoplasmic reticulum, golgi	51.1	50.15
TraesCS1B01G209600.1	Wheat	endoplasmic reticulum, extracellular	51.1	50.15
TraesCS1A01G194800.1	Wheat	golgi	50.78	49.85
EER91872	Sorghum	endoplasmic reticulum, golgi	51.1	49.7
GSMUA_Achr4P27310_001	Banana	endoplasmic reticulum, golgi	49.84	49.53
Zm00001d030091_P001	Maize	extracellular, golgi	50.47	49.09
Os10t0577000-02	Rice	endoplasmic reticulum, golgi	48.59	47.26
GSMUA_Achr5P03470_001	Banana	extracellular	22.26	47.02
HORVU6Hr1G058250.1	Barley	cytosol	45.77	44.79
GSMUA_Achr5P03480_001	Banana	nucleus	27.27	42.86
CDX91527	Canola	endoplasmic reticulum, vacuole	5.96	38.0

Protein Annotations

EnsemblPlants:Solyc03g097180.2.1	EnsemblPlantsGene:Solyc03g097180.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005886	GO:GO:0016020	InterPro:IPR011528	InterPro:NERD	PANTHER:PTHR35287
PFAM:PF08378	PFscan:PS50965	SignalP:SignalP-noTM	UniParc:UPI00027681AB	UniProt:K4BJD5	MapMan:35.2

Description

No Description!

Coordinates

chr3:-:59497348..59504484

Molecular Weight (calculated)

35784.1 Da

IEP (calculated)

8.342

GRAVY (calculated)

-0.142

Length

319 amino acids

Sequence
(BLAST)

001: MVVELFCFIA VIVVLKYFFY DDDVIDVGSS DFNALFTVAE RLEKLYGGKA HVGLQIPDQD SGSRQSVDLV LVTRREAVIV CVKNVAGFVS VDKDGRWVCT
101: GSHKTERLPN PVAEAKQLVP ILESYLEQRG VILPEGYLSC KVICSNPNFR TIDSDSFPSE VITYDQWIQL RPESNMLSGW IKGAFHGGKK DVQESIREKL
201: NLVLSTAPMW DRLELKGNKY VLGEFLEFKG DNEDIRALGN IRRSKVSTVT IQKTSMFGVA HSKLQVLYCL RDYRGEGASA SDWKEVTVHS RTEIKIQPKG
301: STKVRKYKLS SVISMSLSA

Best Arabidopsis Sequence Match ( AT1G65020.1 )
(BLAST)

001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA

Arabidopsis Description

At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.