Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P27310_001 | Banana | endoplasmic reticulum, golgi | 64.04 | 40.5 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 49.26 | 31.06 |
| Bra004108.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 47.78 | 30.41 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 47.29 | 30.09 |
| KRH77782 | Soybean | endoplasmic reticulum | 45.32 | 28.57 |
| Bra022499.1-P | Field mustard | endoplasmic reticulum, vacuole | 44.83 | 28.53 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 44.83 | 28.26 |
| Solyc03g097180.2.1 | Tomato | extracellular | 42.86 | 27.27 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 42.36 | 26.96 |
| GSMUA_Achr5P03470_001 | Banana | extracellular | 3.94 | 5.3 |
| CDY03064 | Canola | endoplasmic reticulum | 0.49 | 1.33 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P03480_001 | EnsemblPlants:GSMUA_Achr5T03480_001 | EnsemblPlantsGene:GSMUA_Achr5G03480_001 | PANTHER:PTHR35287 | SEG:seg | UniParc:UPI0002962615 |
| UniProt:M0SVC7 | MapMan:35.2 | : | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03480_001]
Coordinates
chr5:+:2382052..2391451
Molecular Weight (calculated)
22980.6 Da
IEP (calculated)
10.417
GRAVY (calculated)
-0.671
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKNGNVTRH PPDQRTARGS PYPAAARPPT QPKVQSASSI YSHPEVISSH EWKELKPESR GGFSNWIKRA VGKNDMQDGF YQKLHFILST SPMWDRLELK
101: SNRNILGEFL KFKGYQHDMQ ALKNVKRSKV GRFIVQKPSI LGLGSSRLQL LCIQRDYQSE DALSDECKEI AVEPSTEVLF QPLNSNKLKK LKLSSIVRAT
201: LSG
101: SNRNILGEFL KFKGYQHDMQ ALKNVKRSKV GRFIVQKPSI LGLGSSRLQL LCIQRDYQSE DALSDECKEI AVEPSTEVLF QPLNSNKLKK LKLSSIVRAT
201: LSG
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.