Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- plastid 1
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 94.41 | 94.41 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 68.32 | 68.97 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 67.7 | 67.7 |
| Bra022499.1-P | Field mustard | endoplasmic reticulum, vacuole | 63.35 | 63.95 |
| CDY39295 | Canola | endoplasmic reticulum | 63.35 | 63.75 |
| Bra004108.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 63.04 | 63.64 |
| CDY07441 | Canola | cytosol | 63.04 | 63.64 |
| CDY16384 | Canola | endoplasmic reticulum, extracellular | 63.35 | 62.01 |
| Solyc03g097180.2.1 | Tomato | extracellular | 60.56 | 61.13 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 60.25 | 60.81 |
| CDX91528 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 55.59 | 60.47 |
| GSMUA_Achr5P03470_001 | Banana | extracellular | 25.16 | 53.64 |
| GSMUA_Achr4P27310_001 | Banana | endoplasmic reticulum, golgi | 52.8 | 52.96 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 8.07 | 52.0 |
| Zm00001d030091_P001 | Maize | extracellular, golgi | 51.86 | 50.91 |
| EER91872 | Sorghum | endoplasmic reticulum, golgi | 50.93 | 50.0 |
| TraesCS1A01G194800.1 | Wheat | golgi | 50.31 | 49.85 |
| TraesCS1D01G198400.1 | Wheat | endoplasmic reticulum, golgi | 50.0 | 49.54 |
| TraesCS1B01G209600.1 | Wheat | endoplasmic reticulum, extracellular | 49.69 | 49.23 |
| Os10t0577000-02 | Rice | endoplasmic reticulum, golgi | 49.07 | 48.17 |
| GSMUA_Achr5P03480_001 | Banana | nucleus | 28.57 | 45.32 |
| HORVU6Hr1G058250.1 | Barley | cytosol | 44.1 | 43.56 |
Protein Annotations
| EMBL:ACUP02000685 | EnsemblPlants:KRH77782 | EnsemblPlantsGene:GLYMA_01G233500 | EntrezGene:100795243 | InterPro:IPR011528 | InterPro:NERD |
| PANTHER:PTHR35287 | PFAM:PF08378 | PFscan:PS50965 | ProteinID:KRH77782 | ProteinID:KRH77782.1 | UniParc:UPI00023378F9 |
| UniProt:I1JAN1 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:55979904..55983579
Molecular Weight (calculated)
36510.1 Da
IEP (calculated)
9.211
GRAVY (calculated)
-0.264
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLEIIFGLV IYKLFRRFFY DDDVLDIEGS DSSALFFVAD RLKKLYGANV YVGLRIPDAD TASRQSIDMV LLTKQELWVI SVKNFSGILT IGGDGSWVCE
101: KPDKHKAERH PDPVEEARKQ ASIVESYLEQ RGVALPEGYI SCKVILPNPK LCTIPAGSFP SEVITHDQWM QLKPEPKRML SSWVKSAFRS GKKDMQESVN
201: QNLDFVLGSA PIWDRVELKG NKYVLGEFLE FKGKQEDVEA LRPIRRSKVG RMIIQKTSMF GLAPSRLQVL YSLRDYRTEG ASGPEWKEVT VRSSTEIAFQ
301: PENASKVRKF KLSSVSSMLL SA
101: KPDKHKAERH PDPVEEARKQ ASIVESYLEQ RGVALPEGYI SCKVILPNPK LCTIPAGSFP SEVITHDQWM QLKPEPKRML SSWVKSAFRS GKKDMQESVN
201: QNLDFVLGSA PIWDRVELKG NKYVLGEFLE FKGKQEDVEA LRPIRRSKVG RMIIQKTSMF GLAPSRLQVL YSLRDYRTEG ASGPEWKEVT VRSSTEIAFQ
301: PENASKVRKF KLSSVSSMLL SA
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.