Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra022499.1-P | Field mustard | endoplasmic reticulum, vacuole | 96.96 | 100.0 |
| CDX91528 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 83.89 | 93.24 |
| CDY07441 | Canola | cytosol | 83.89 | 86.52 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 83.28 | 85.89 |
| CDY39295 | Canola | endoplasmic reticulum | 82.98 | 85.31 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 12.16 | 80.0 |
| CDY03064 | Canola | endoplasmic reticulum | 17.02 | 74.67 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 62.01 | 63.35 |
| KRH77782 | Soybean | endoplasmic reticulum | 62.01 | 63.35 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 59.27 | 60.56 |
| Solyc03g097180.2.1 | Tomato | extracellular | 55.62 | 57.37 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 54.71 | 56.43 |
Protein Annotations
| EnsemblPlants:CDY16384 | EnsemblPlantsGene:GSBRNA2T00090921001 | InterPro:IPR011528 | InterPro:NERD | PANTHER:PTHR35287 | PFAM:PF08378 |
| PFscan:PS50965 | ProteinID:CDY16384 | ProteinID:CDY16384.1 | SEG:seg | UniParc:UPI0004EE69E6 | UniProt:A0A078FTW3 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA02g11880DBnaA02g11880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTW3]
Coordinates
chrLK032063:-:297794..299942
Molecular Weight (calculated)
36859.1 Da
IEP (calculated)
8.106
GRAVY (calculated)
-0.203
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MWVEIICALA IYKIVRLFFY NDEFSDVETS DSTALFSVAH RHTIPSLSLF LLEKLHGGKA YVGLRIPDAD TSSRQDVDLV LVTKGQVEVI GVKNLSGIVT
101: VTSDGSWVCE GGKHHSTHTY PDPLAEVKKQ ASVLESYLEQ RGVTLLEENI SCKVVIPNPN FRTMHAFPSE VITYEEWQHL KPVSRNILSG WVKGAFSSGK
201: EMQDSSHQKL NFILGSAPVW DRVELKNSKI VLGEFLEFKG KEEDTLALRH IKRSKVDRIS IQQTSMLGFA PTRLQVLYSY RDYRSEGSSG SETKEVTVRS
301: STEVVFQPRD SGKIKKFKLS SLLSVSLSA
101: VTSDGSWVCE GGKHHSTHTY PDPLAEVKKQ ASVLESYLEQ RGVTLLEENI SCKVVIPNPN FRTMHAFPSE VITYEEWQHL KPVSRNILSG WVKGAFSSGK
201: EMQDSSHQKL NFILGSAPVW DRVELKNSKI VLGEFLEFKG KEEDTLALRH IKRSKVDRIS IQQTSMLGFA PTRLQVLYSY RDYRSEGSSG SETKEVTVRS
301: STEVVFQPRD SGKIKKFKLS SLLSVSLSA
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.