Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- mitochondrion 1
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07441 | Canola | cytosol | 93.12 | 93.42 |
| CDY03064 | Canola | endoplasmic reticulum | 20.31 | 86.67 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 86.25 | 86.52 |
| CDX91528 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 77.19 | 83.45 |
| CDY16384 | Canola | endoplasmic reticulum, extracellular | 85.31 | 82.98 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 64.06 | 63.66 |
| KRH77782 | Soybean | endoplasmic reticulum | 63.75 | 63.35 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 63.12 | 62.73 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 9.06 | 58.0 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 55.94 | 56.11 |
| Solyc03g097180.2.1 | Tomato | extracellular | 55.94 | 56.11 |
Protein Annotations
| EnsemblPlants:CDY39295 | EnsemblPlantsGene:GSBRNA2T00067542001 | InterPro:IPR011528 | InterPro:NERD | PANTHER:PTHR35287 | PFAM:PF08378 |
| PFscan:PS50965 | ProteinID:CDY39295 | ProteinID:CDY39295.1 | SEG:seg | UniParc:UPI0004EF0FFE | UniProt:A0A078HLF6 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC06g26960DBnaC06g26960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLF6]
Coordinates
chrLK032444:+:300473..302488
Molecular Weight (calculated)
35913.1 Da
IEP (calculated)
9.414
GRAVY (calculated)
-0.254
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MWAEIICGLV IYKLVRRFFH DDEISDDDTF GSTALFSVAH RLEKLYGGKA YVGLRIPDAD TSSRQDIDLV LLTKGQVVVI GVKNLSGIVT VTSDGSWVCE
101: AGKHHTTQTY PDPLVDVKKQ ASVLVSYLEQ RGVTLLEGNL SCKVVIPNPN FRTTHAFPSE EVITYEEWKH LKPVSRSTLS GWVKGAFCTG KEMHESSHQK
201: LNFILATAPM WDRVELKGSK IVLGEFLEFK GKQEDTLALK QIKRSKVDRI SIQQTSMLGF APSRLQVRYS YRDYRSEGRS GSESKEVTVR SSTEVLFQPR
301: DSTKIKKFKL SSLLSISLSA
101: AGKHHTTQTY PDPLVDVKKQ ASVLVSYLEQ RGVTLLEGNL SCKVVIPNPN FRTTHAFPSE EVITYEEWKH LKPVSRSTLS GWVKGAFCTG KEMHESSHQK
201: LNFILATAPM WDRVELKGSK IVLGEFLEFK GKQEDTLALK QIKRSKVDRI SIQQTSMLGF APSRLQVRYS YRDYRSEGRS GSESKEVTVR SSTEVLFQPR
301: DSTKIKKFKL SSLLSISLSA
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.