Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- endoplasmic reticulum 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004108.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 98.43 | 98.43 |
| CDY39295 | Canola | endoplasmic reticulum | 93.42 | 93.12 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 85.89 | 85.89 |
| CDY16384 | Canola | endoplasmic reticulum, extracellular | 86.52 | 83.89 |
| CDX91528 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 77.12 | 83.11 |
| CDY03064 | Canola | endoplasmic reticulum | 18.81 | 80.0 |
| KRH77782 | Soybean | endoplasmic reticulum | 63.64 | 63.04 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 63.01 | 62.42 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 63.01 | 62.42 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 9.4 | 60.0 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 56.43 | 56.43 |
| Solyc03g097180.2.1 | Tomato | extracellular | 56.43 | 56.43 |
Protein Annotations
| EnsemblPlants:CDY07441 | EnsemblPlantsGene:GSBRNA2T00124435001 | InterPro:IPR011528 | InterPro:NERD | PANTHER:PTHR35287 | PFAM:PF08378 |
| PFscan:PS50965 | ProteinID:CDY07441 | ProteinID:CDY07441.1 | SEG:seg | UniParc:UPI0004EDB36D | UniProt:A0A078F233 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA07g25200DBnaA07g25200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F233]
Coordinates
chrLK031978:-:731655..733393
Molecular Weight (calculated)
35991.3 Da
IEP (calculated)
9.656
GRAVY (calculated)
-0.315
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MWAEIICGLL IYKFVRRFFK DDEISDETSS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TSSRQDIDLV LLTKGQVVVI GVKTLSGIVT VASDGSWVCE
101: AGKHHTTQTY PDPLVEVKKQ ASVLESYLEQ RGVTLLEENL SCKVVIPNPN FRTMHAFPSE VITYEEWKHL KPVSRKTLSG WVKGALWTGK EMQESSHQKL
201: NFILGTAPMW DRVELKSSKI VLGEFLEFKG KQEDTLALKQ IKRSKVDRIS IQQTSMLGFA PSRLQVRYSY RDYRSEGRSG SESKEVTVRS STEVLFQPRD
301: STKIKKFKLS SLLSISPSA
101: AGKHHTTQTY PDPLVEVKKQ ASVLESYLEQ RGVTLLEENL SCKVVIPNPN FRTMHAFPSE VITYEEWKHL KPVSRKTLSG WVKGALWTGK EMQESSHQKL
201: NFILGTAPMW DRVELKSSKI VLGEFLEFKG KQEDTLALKQ IKRSKVDRIS IQQTSMLGFA PSRLQVRYSY RDYRSEGRSG SESKEVTVRS STEVLFQPRD
301: STKIKKFKLS SLLSISPSA
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.