Factsheet for PGSC0003DMT400008203

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 6
golgi 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097180.2.1	Tomato	extracellular	95.61	95.61
VIT_16s0039g01660.t01	Wine grape	endoplasmic reticulum, extracellular	63.64	63.04
KRH77782	Soybean	endoplasmic reticulum	60.81	60.25
AT1G65020.1	Thale cress	extracellular, vacuole	59.87	59.87
KRH27693	Soybean	endoplasmic reticulum, extracellular	60.19	59.63
Bra004108.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	57.05	57.05
Bra022499.1-P	Field mustard	endoplasmic reticulum, vacuole	56.43	56.43
CDY07441	Canola	cytosol	56.43	56.43
CDY39295	Canola	endoplasmic reticulum	56.11	55.94
CDY16384	Canola	endoplasmic reticulum, extracellular	56.43	54.71
CDX91528	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.47	54.39
EER91872	Sorghum	endoplasmic reticulum, golgi	51.41	50.0
TraesCS1D01G198400.1	Wheat	endoplasmic reticulum, golgi	50.78	49.85
TraesCS1B01G209600.1	Wheat	endoplasmic reticulum, extracellular	50.78	49.85
TraesCS1A01G194800.1	Wheat	golgi	50.47	49.54
Zm00001d030091_P001	Maize	extracellular, golgi	50.78	49.39
GSMUA_Achr4P27310_001	Banana	endoplasmic reticulum, golgi	49.53	49.22
GSMUA_Achr5P03470_001	Banana	extracellular	22.57	47.68
Os10t0577000-02	Rice	endoplasmic reticulum, golgi	47.65	46.34
HORVU6Hr1G058250.1	Barley	cytosol	45.14	44.17
GSMUA_Achr5P03480_001	Banana	nucleus	26.96	42.36
CDX91527	Canola	endoplasmic reticulum, vacuole	6.27	40.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400008203	EnsemblPlantsGene:PGSC0003DMG400003162	EntrezGene:102586701	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005886	GO:GO:0016020	InterPro:IPR011528	InterPro:NERD
PANTHER:PTHR35287	PFAM:PF08378	PFscan:PS50965	PGSC:PGSC0003DMG400003162	RefSeq:XP_006347592.1	SignalP:SignalP-noTM
UniParc:UPI000295A381	UniProt:M0ZU91	MapMan:35.2	:	:	:

Description

NERD domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003162]

Coordinates

chr3:+:46569391..46576666

Molecular Weight (calculated)

35770.0 Da

IEP (calculated)

7.814

GRAVY (calculated)

-0.168

Length

319 amino acids

Sequence
(BLAST)

001: MVVELFCFLA VVVVLKYFFY DDDVIDVGSS DFNALFNVAE RLEKLYDGKA HVGLQIPDQD SGSRQSIDVV LVTRREAVIV CVKNVAGFIS VDKDGRWVCT
101: GSHKTERLPN PVAEAKQLVP ILESYLEQRG ITLPEGYLSC KVICSNPNFR TIDSDSFPSE VITYDQWIQL KPESNMLSGW IKGAFHGGKK DVQESIREKL
201: NLVLSTAPMW DRLELKGNKF VLGEFLEFKG DNEDIRALGN IRRSKVSTVT IQKTSMFGVA PSKLQVHYCL RDYRGEGASA SDWTEVTVHS RTEIKIQPKG
301: STKVRKYKLS SVISMSLSA

Best Arabidopsis Sequence Match ( AT1G65020.1 )
(BLAST)

001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA

Arabidopsis Description

At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.