Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39295 | Canola | endoplasmic reticulum | 86.52 | 86.25 |
| Bra004108.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 86.21 | 86.21 |
| Bra022499.1-P | Field mustard | endoplasmic reticulum, vacuole | 85.89 | 85.89 |
| CDY07441 | Canola | cytosol | 85.89 | 85.89 |
| CDY16384 | Canola | endoplasmic reticulum, extracellular | 85.89 | 83.28 |
| CDX91528 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 74.61 | 80.41 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 10.97 | 70.0 |
| KRH77782 | Soybean | endoplasmic reticulum | 68.97 | 68.32 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 67.71 | 67.08 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 66.46 | 65.84 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 59.87 | 59.87 |
| Solyc03g097180.2.1 | Tomato | extracellular | 59.56 | 59.56 |
| GSMUA_Achr5P03470_001 | Banana | extracellular | 26.02 | 54.97 |
| GSMUA_Achr4P27310_001 | Banana | endoplasmic reticulum, golgi | 54.23 | 53.89 |
| Zm00001d030091_P001 | Maize | extracellular, golgi | 52.35 | 50.91 |
| EER91872 | Sorghum | endoplasmic reticulum, golgi | 52.04 | 50.61 |
| TraesCS1D01G198400.1 | Wheat | endoplasmic reticulum, golgi | 51.1 | 50.15 |
| TraesCS1A01G194800.1 | Wheat | golgi | 50.78 | 49.85 |
| TraesCS1B01G209600.1 | Wheat | endoplasmic reticulum, extracellular | 50.78 | 49.85 |
| Os10t0577000-02 | Rice | endoplasmic reticulum, golgi | 49.22 | 47.87 |
| GSMUA_Achr5P03480_001 | Banana | nucleus | 30.09 | 47.29 |
| HORVU6Hr1G058250.1 | Barley | cytosol | 44.83 | 43.87 |
Protein Annotations
| MapMan:35.2 | EntrezGene:842810 | UniProt:A0A178WBR2 | ProteinID:AEE34316.1 | ArrayExpress:AT1G65020 | EnsemblPlantsGene:AT1G65020 |
| RefSeq:AT1G65020 | TAIR:AT1G65020 | RefSeq:AT1G65020-TAIR-G | EnsemblPlants:AT1G65020.1 | TAIR:AT1G65020.1 | EMBL:BT015804 |
| EMBL:BT020187 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR011528 | InterPro:NERD | RefSeq:NP_176682.1 |
| ProteinID:OAP14813.1 | PFAM:PF08378 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50965 | PANTHER:PTHR35287 | UniProt:Q5XF12 |
| UniParc:UPI000016321E | SEG:seg | : | : | : | : |
Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
Coordinates
chr1:-:24154344..24156616
Molecular Weight (calculated)
35625.6 Da
IEP (calculated)
8.984
GRAVY (calculated)
-0.220
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.