Factsheet for Bra022499.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

nucleus 1
endoplasmic reticulum 4
plastid 1
extracellular 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16384	Canola	endoplasmic reticulum, extracellular	100.0	96.96
Bra004108.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	86.21	86.21
AT1G65020.1	Thale cress	extracellular, vacuole	85.89	85.89
KRH77782	Soybean	endoplasmic reticulum	63.95	63.35
KRH27693	Soybean	endoplasmic reticulum, extracellular	63.95	63.35
VIT_16s0039g01660.t01	Wine grape	endoplasmic reticulum, extracellular	61.13	60.56
Solyc03g097180.2.1	Tomato	extracellular	57.37	57.37
PGSC0003DMT400008203	Potato	mitochondrion	56.43	56.43
GSMUA_Achr4P27310_001	Banana	endoplasmic reticulum, golgi	52.35	52.02
GSMUA_Achr5P03470_001	Banana	extracellular	23.82	50.33
Zm00001d030091_P001	Maize	extracellular, golgi	51.41	50.0
EER91872	Sorghum	endoplasmic reticulum, golgi	50.78	49.39
TraesCS1D01G198400.1	Wheat	endoplasmic reticulum, golgi	49.53	48.62
TraesCS1A01G194800.1	Wheat	golgi	49.22	48.31
TraesCS1B01G209600.1	Wheat	endoplasmic reticulum, extracellular	49.22	48.31
Os10t0577000-02	Rice	endoplasmic reticulum, golgi	49.53	48.17
GSMUA_Achr5P03480_001	Banana	nucleus	28.53	44.83
HORVU6Hr1G058250.1	Barley	cytosol	42.95	42.02

Protein Annotations

EnsemblPlants:Bra022499.1	EnsemblPlants:Bra022499.1-P	EnsemblPlantsGene:Bra022499	InterPro:IPR011528	InterPro:NERD	PANTHER:PTHR35287
PFAM:PF08378	PFscan:PS50965	SEG:seg	UniParc:UPI0002545771	UniProt:M4E151	MapMan:35.2

Description

AT1G65020 (E=7e-152) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 53 Blast hits to 53 proteins in 19 species: Archae - 0; Bacteria - 18; Metazoa - 9; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Coordinates

chrA02:-:9416582..9418444

Molecular Weight (calculated)

35749.7 Da

IEP (calculated)

8.097

GRAVY (calculated)

-0.245

Length

319 amino acids

Sequence
(BLAST)

001: MWVEIICALA IYKIVRLFFY NDEFSDVETS DSTALFSVAH RLEKLHGGKA YVGLRIPDAD TSSRQDVDLV LVTKGQVEVI GVKNLSGIVT VTSDGSWVCE
101: GGKHHSTHTY PDPLAEVKKQ ASVLESYLEQ RGVTLLEENI SCKVVIPNPN FRTMHAFPSE VITYEEWQHL KPVSRNILSG WVKGAFSSGK EMQDSSHQKL
201: NFILGSAPVW DRVELKNSKI VLGEFLEFKG KEEDTLALRH IKRSKVDRIS IQQTSMLGFA PTRLQVLYSY RDYRSEGSSG SETKEVTVRS STEVVFQPRD
301: SGKIKKFKLS SLLSVSLSA

Best Arabidopsis Sequence Match ( AT1G65020.1 )
(BLAST)

001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA

Arabidopsis Description

At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.