Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P27310_001 | Banana | endoplasmic reticulum, golgi | 73.51 | 34.58 |
| Zm00001d030091_P001 | Maize | extracellular, golgi | 61.59 | 28.35 |
| EER91872 | Sorghum | endoplasmic reticulum, golgi | 60.93 | 28.05 |
| TraesCS1D01G198400.1 | Wheat | endoplasmic reticulum, golgi | 60.26 | 28.0 |
| TraesCS1B01G209600.1 | Wheat | endoplasmic reticulum, extracellular | 60.26 | 28.0 |
| TraesCS1A01G194800.1 | Wheat | golgi | 59.6 | 27.69 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 54.97 | 26.02 |
| KRH77782 | Soybean | endoplasmic reticulum | 53.64 | 25.16 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 53.64 | 25.16 |
| Os10t0577000-02 | Rice | endoplasmic reticulum, golgi | 52.98 | 24.39 |
| Bra004108.1-P | Field mustard | cytosol, endoplasmic reticulum, nucleus | 50.99 | 24.14 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 50.99 | 23.91 |
| Bra022499.1-P | Field mustard | endoplasmic reticulum, vacuole | 50.33 | 23.82 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 47.68 | 22.57 |
| Solyc03g097180.2.1 | Tomato | extracellular | 47.02 | 22.26 |
| HORVU6Hr1G058250.1 | Barley | cytosol | 44.37 | 20.55 |
| GSMUA_Achr5P03480_001 | Banana | nucleus | 5.3 | 3.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P03470_001 | EnsemblPlants:GSMUA_Achr5T03470_001 | EnsemblPlantsGene:GSMUA_Achr5G03470_001 | InterPro:IPR011528 | InterPro:NERD | PANTHER:PTHR35287 |
| PFAM:PF08378 | PFscan:PS50965 | SEG:seg | UniParc:UPI000296BCB3 | UniProt:M0SVC6 | MapMan:35.2 |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G03470_001]
Coordinates
chr5:+:2380537..2381530
Molecular Weight (calculated)
16754.3 Da
IEP (calculated)
6.508
GRAVY (calculated)
0.075
Length
151 amino acids
Sequence
(BLAST)
(BLAST)
001: MWLEILCGLV FYNFFRQIIN GEDDFPDIDT SDSDASFAVA ARLEKLYGGK AFVGLRIPDA DTGTRQHIDV VLVTKREAMV VAVRNFSGLV AIDGGGNWVD
101: KKHKSQTHLN PVIEVSRQVA VLESYLEQRG LLLPKGHVIG RVILPDSICR C
101: KKHKSQTHLN PVIEVSRQVA VLESYLEQRG LLLPKGHVIG RVILPDSICR C
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.