Factsheet for GSMUA_Achr4P27310_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03470_001	Banana	extracellular	34.58	73.51
GSMUA_Achr5P03480_001	Banana	nucleus	40.5	64.04
EER91872	Sorghum	endoplasmic reticulum, golgi	64.17	62.8
Zm00001d030091_P001	Maize	extracellular, golgi	63.24	61.89
Os10t0577000-02	Rice	endoplasmic reticulum, golgi	61.37	60.06
TraesCS1D01G198400.1	Wheat	endoplasmic reticulum, golgi	60.44	59.69
TraesCS1A01G194800.1	Wheat	golgi	60.44	59.69
TraesCS1B01G209600.1	Wheat	endoplasmic reticulum, extracellular	60.12	59.38
AT1G65020.1	Thale cress	extracellular, vacuole	53.89	54.23
KRH77782	Soybean	endoplasmic reticulum	52.96	52.8
Bra022499.1-P	Field mustard	endoplasmic reticulum, vacuole	52.02	52.35
Bra004108.1-P	Field mustard	cytosol, endoplasmic reticulum, nucleus	52.02	52.35
KRH27693	Soybean	endoplasmic reticulum, extracellular	52.34	52.17
VIT_16s0039g01660.t01	Wine grape	endoplasmic reticulum, extracellular	52.02	51.86
HORVU6Hr1G058250.1	Barley	cytosol	52.02	51.23
Solyc03g097180.2.1	Tomato	extracellular	49.53	49.84
PGSC0003DMT400008203	Potato	mitochondrion	49.22	49.53

Protein Annotations

EnsemblPlants:GSMUA_Achr4P27310_001	EnsemblPlants:GSMUA_Achr4T27310_001	EnsemblPlantsGene:GSMUA_Achr4G27310_001	InterPro:IPR011528	InterPro:NERD	PANTHER:PTHR35287
PFAM:PF08378	PFscan:PS50965	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000296F7D5	UniProt:M0SSJ3
MapMan:35.2	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G27310_001]

Coordinates

chr4:+:26188204..26194473

Molecular Weight (calculated)

36110.9 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.212

Length

321 amino acids

Sequence
(BLAST)

001: MWVVILCGLI LFKILRRIFH RADAFPDIDS SDSDASFAVA ARLEKLYGSK AFVGLRIPDA DAGVRQHIDV VLVTKREVMV VAVRNFSGFV EIGDNENWVC
101: TSDKKHRPQS HPDPVLEVSK QVAVIESYLE QRGVPLPKGH VIGQVILPHP NCRPAYSISS QLEVVSFDKW RELKPKPRSG LSNWIKGAVG KSDMQDGFCE
201: KLHFILSTSP MWDRLELRGD RNILGEFVEF KGNKNDMQAL RNVKRSKVGR FIVQKPSMLG LGRSRLQVLY FPRDYRGEGA SSLECKEIAV KPSTEVIFQQ
301: MNSKKAKKFK LSSIVSVTLS G

Best Arabidopsis Sequence Match ( AT1G65020.1 )
(BLAST)

001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA

Arabidopsis Description

At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.