Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16384 | Canola | endoplasmic reticulum, extracellular | 93.24 | 83.89 |
| CDY39295 | Canola | endoplasmic reticulum | 83.45 | 77.19 |
| CDY07441 | Canola | cytosol | 83.11 | 77.12 |
| AT1G65020.1 | Thale cress | extracellular, vacuole | 80.41 | 74.61 |
| KRH27693 | Soybean | endoplasmic reticulum, extracellular | 60.47 | 55.59 |
| KRH77782 | Soybean | endoplasmic reticulum | 60.47 | 55.59 |
| VIT_16s0039g01660.t01 | Wine grape | endoplasmic reticulum, extracellular | 59.46 | 54.66 |
| Solyc03g097180.2.1 | Tomato | extracellular | 55.74 | 51.72 |
| PGSC0003DMT400008203 | Potato | mitochondrion | 54.39 | 50.47 |
| CDY03064 | Canola | endoplasmic reticulum | 11.15 | 44.0 |
| CDX91527 | Canola | endoplasmic reticulum, vacuole | 2.36 | 14.0 |
Protein Annotations
| EnsemblPlants:CDX91528 | EnsemblPlantsGene:GSBRNA2T00152907001 | InterPro:IPR011528 | InterPro:NERD | PANTHER:PTHR35287 | PFAM:PF08378 |
| PFscan:PS50965 | ProteinID:CDX91528 | ProteinID:CDX91528.1 | SEG:seg | UniParc:UPI0004EEC81B | MapMan:35.2 |
Description
BnaC02g16320D
Coordinates
chrLK031868:+:126862..129864
Molecular Weight (calculated)
33112.7 Da
IEP (calculated)
9.453
GRAVY (calculated)
-0.308
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MMALSSIRWV EFHLIANKLE KLHGGKAYVG LRIPDADTSS RQDVDLVLVT KGQVEVVGVK NLSGIVTVTS DGSWVCEGGK HHSTQTYPDP LAEVKKQASV
101: LESYLEQRGV TLLEENISCK VVIPNPNFRT MHAFPSEVIT YEEWQHLKPV SRNILSGWVK GAFSSGKEMH DSSHQKLNFI LGSAPVWDRV ELKNSKIVLG
201: EFLEFKGKEE DTLALRHIKR SKVDRISIQQ TSMLGFAPTR LQVLYSYRDY RSEGSSGSET KEMTVRSSTE VVFQPRDSGK IKKFKLSSLL SVSLSA
101: LESYLEQRGV TLLEENISCK VVIPNPNFRT MHAFPSEVIT YEEWQHLKPV SRNILSGWVK GAFSSGKEMH DSSHQKLNFI LGSAPVWDRV ELKNSKIVLG
201: EFLEFKGKEE DTLALRHIKR SKVDRISIQQ TSMLGFAPTR LQVLYSYRDY RSEGSSGSET KEMTVRSSTE VVFQPRDSGK IKKFKLSSLL SVSLSA
001: MWIEIICGLV IYKLVRRFFY DDEFSDVETS DSTALFSVAH RLEKLYGGKA YVGLRIPDAD TASRQDIDVV LVTKGDVVVI SVKNLSGIVT VTSDGSWVCE
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
101: GGKHHTTETF PDPLAEVKKQ ASVLESYLEQ RGVTLLEGNV SCKVVIPNPS FRTIHAFPSE VITYEDWQQL KPVSKSKISG WVKGAFSTGK EMQESSHQKL
201: NFILGTAPTW DRVELKSSKI VLGEFLEFKG KQEDTLALRN IKRSKVDRVS IQKTSMFGLA PSRLQVLYSY RDYRSEGSSG AESKEVTVRS STEVLFQPRD
301: STKMKKFKLS SLVSISLSA
Arabidopsis Description
At1g65020 [Source:UniProtKB/TrEMBL;Acc:Q5XF12]
SUBAcon: [extracellular,vacuole]
SUBAcon: [extracellular,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.