Factsheet for Bra038307.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000150.1-P
Bra000785.1-P
Bra001174.1-P
Bra001287.1-P
Bra001423.1-P
Bra001773.1-P
Bra002338.1-P
Bra002662.1-P
Bra004108.1-P
Bra005012.1-P
Bra006775.1-P
Bra009591.1-P
Bra010033.1-P
Bra015169.1-P
Bra017051.1-P
Bra018601.1-P
Bra020135.1-P
Bra020378.1-P
Bra022499.1-P
Bra029481.1-P
Bra034807.1-P
Bra035820.1-P
Bra036139.1-P
Bra038252.1-P
Bra038682.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	Bra018601.1-P	AT1G08780.1	20706207
AT1G69400.1	Bra004108.1-P	AT1G65020.1	20706207
AT1G69400.1	Bra022499.1-P	AT1G65020.1	20706207
AT1G69400.1	Bra015169.1-P	AT2G05830.1	20706207
AT1G69400.1	Bra000150.1-P	AT2G39800.1	20706207
AT1G69400.1	Bra005012.1-P	AT2G39800.1	20706207
AT1G69400.1	Bra017051.1-P	AT2G39800.1	20706207
AT1G69400.1	Bra001287.1-P	AT3G10180.1	20706207
AT1G69400.1	Bra009591.1-P	AT3G10180.1	20706207
AT1G69400.1	Bra001423.1-P	AT3G11830.1	20706207
AT1G69400.1	Bra034807.1-P	AT3G11830.1	20706207
AT1G69400.1	Bra038682.1-P	AT3G11830.1	20706207
AT1G69400.1	Bra001773.1-P	AT3G20050.1	20706207
AT1G69400.1	Bra035820.1-P	AT3G20050.1	20706207
AT1G69400.1	Bra038252.1-P	AT3G20050.1	20706207
AT1G69400.1	Bra000785.1-P	AT4G04020.1	20706207
AT1G69400.1	Bra029481.1-P	AT4G04020.1	20706207
AT1G69400.1	Bra002338.1-P	AT5G20900.1	20706207
AT1G69400.1	Bra020135.1-P	AT5G20900.1	20706207
AT1G69400.1	Bra001174.1-P	AT5G26360.1	20706207
AT1G69400.1	Bra040242.1-P	AT5G26360.1	20706207
AT1G69400.1	Bra010033.1-P	AT5G49510.1	20706207
AT1G69400.1	Bra036139.1-P	AT5G49510.1	20706207
AT1G69400.1	Bra002662.1-P	AT5G58290.1	20706207
AT1G69400.1	Bra006775.1-P	AT5G58290.1	20706207
AT1G69400.1	Bra020378.1-P	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44065	Canola	cytosol	78.84	94.6
CDY28548	Canola	cytosol	76.45	91.75
AT1G69400.1	Thale cress	cytosol	58.47	70.38
VIT_01s0113g00430.t01	Wine grape	cytosol	39.95	46.18
KRH70829	Soybean	cytosol	38.62	44.24
KRH74957	Soybean	cytosol	38.62	44.24
GSMUA_Achr9P09460_001	Banana	cytosol	35.19	41.05
TraesCS5D01G406300.1	Wheat	mitochondrion	34.13	40.06
PGSC0003DMT400072830	Potato	cytosol	34.39	40.0
Solyc05g012720.2.1	Tomato	nucleus	29.1	39.57
TraesCS5B01G401600.1	Wheat	mitochondrion	33.6	39.44
TraesCS5A01G396600.1	Wheat	mitochondrion	33.07	38.82
HORVU5Hr1G096830.5	Barley	mitochondrion	32.8	38.51
Zm00001d034081_P002	Maize	cytosol, mitochondrion	29.37	36.88
OQU90950	Sorghum	mitochondrion	31.48	36.84
Bra038220.1-P	Field mustard	cytosol, plastid	29.89	33.24
Bra014226.1-P	Field mustard	cytosol, plastid	28.84	32.15
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	24.87	31.97
Bra035162.1-P	Field mustard	plastid	19.31	20.98
Bra008447.1-P	Field mustard	plastid	19.05	20.81
Bra003577.1-P	Field mustard	cytosol	14.81	20.29

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra038307	EnsemblPlants:Bra038307.1	EnsemblPlants:Bra038307.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4FB41
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF17	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00025466A4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT1G69400 (E=6e-145) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA02:+:11354973..11357299

Molecular Weight (calculated)

41532.8 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.222

Length

378 amino acids

Sequence
(BLAST)

001: MLLPLHTRHQ HGSYDKFPAS QSFKAVNINF AAVSSSSESS STTIIQVRGG AEIMESDTFV LAKLQNTFSS RVSRDMSGAR LEFQNPIEDS ISKLKFSPES
101: NNLLIASWDS YLRLYNVESS SLILQLYSRA ALLDCCFENE STSYTSGSDG FIQRYDLNAG TVDRIGRHDG IATSVLYSLD KGEVISTGLD KKIKFWDTRR
201: GQSLVLSTDA GAPVRCITVN GNNLVVCVAA SMHIYDLRSL DRPFQSYESQ VEVPIRCLTS VPFSTGYAVG SVDGQVALDF PNTACSSEMK YTFRCHPKSM
301: KGRLHGACIN AIEFTPGGSG TFVTGDNEGY VISWNAKSRR RLFELPKYSN SVASLAFNHT GELLAVASSH TYQEANEK

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.