Factsheet for VIT_01s0113g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0670g00010.t01
VIT_05s0077g00740.t01
VIT_06s0004g08220.t01
VIT_07s0130g00410.t01
VIT_08s0007g05340.t01
VIT_09s0002g07070.t01
VIT_11s0016g00830.t01
VIT_13s0019g02360.t01
VIT_14s0081g00080.t01
VIT_15s0021g02230.t01
VIT_16s0039g01660.t01
VIT_17s0000g08170.t01
VIT_17s0053g00580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	VIT_14s0081g00080.t01	AT1G08780.1	20706207
AT1G69400.1	VIT_16s0039g01660.t01	AT1G65020.1	20706207
AT1G69400.1	VIT_11s0016g00830.t01	AT2G05830.1	20706207
AT1G69400.1	VIT_17s0053g00580.t01	AT2G05830.1	20706207
AT1G69400.1	VIT_13s0019g02360.t01	AT2G39800.1	20706207
AT1G69400.1	VIT_08s0007g05340.t01	AT3G10180.1	20706207
AT1G69400.1	VIT_00s0670g00010.t01	AT3G11830.1	20706207
AT1G69400.1	VIT_15s0021g02230.t01	AT3G20050.1	20706207
AT1G69400.1	VIT_09s0002g07070.t01	AT4G38780.1	20706207
AT1G69400.1	VIT_07s0130g00410.t01	AT5G26360.1	20706207
AT1G69400.1	VIT_17s0000g08170.t01	AT5G26360.1	20706207
AT1G69400.1	VIT_05s0077g00740.t01	AT5G49510.1	20706207
AT1G69400.1	VIT_06s0004g08220.t01	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072830	Potato	cytosol	55.96	56.31
KRH74957	Soybean	cytosol	55.96	55.45
KRH70829	Soybean	cytosol	54.74	54.24
Solyc05g012720.2.1	Tomato	nucleus	44.65	52.52
CDY28548	Canola	cytosol	48.32	50.16
CDY44065	Canola	cytosol	48.32	50.16
GSMUA_Achr9P09460_001	Banana	cytosol	49.54	50.0
AT1G69400.1	Thale cress	cytosol	45.57	47.45
OQU90950	Sorghum	mitochondrion	41.59	42.11
TraesCS5D01G406300.1	Wheat	mitochondrion	41.28	41.93
TraesCS5B01G401600.1	Wheat	mitochondrion	40.98	41.61
Zm00001d034081_P002	Maize	cytosol, mitochondrion	38.23	41.53
TraesCS5A01G396600.1	Wheat	mitochondrion	40.67	41.3
Bra038307.1-P	Field mustard	plastid	46.18	39.95
HORVU5Hr1G096830.5	Barley	mitochondrion	38.84	39.44
VIT_03s0091g00710.t01	Wine grape	cytosol	37.31	36.2
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	26.91	29.93
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	25.69	24.35
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	24.77	23.14
VIT_00s0490g00010.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100254024	wikigene:100254024	MapMan:13.3.5.5.2	Gene3D:2.130.10.10	ProteinID:CBI22304	ProteinID:CBI22304.3
UniProt:D7SXK7	EMBL:FN595240	GO:GO:0000776	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0007049
GO:GO:0007094	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987	GO:GO:0016043	GO:GO:0033597
GO:GO:0043130	GO:GO:1990298	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100254024
wikigene:LOC100254024	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF17	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015CC48F	ArrayExpress:VIT_01s0113g00430	EnsemblPlantsGene:VIT_01s0113g00430
EnsemblPlants:VIT_01s0113g00430.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002267447	RefSeq:XP_002267447.1	:	:	:	:

Description

No Description!

Coordinates

chr1:+:13694392..13716940

Molecular Weight (calculated)

36042.5 Da

IEP (calculated)

5.034

GRAVY (calculated)

-0.219

Length

327 amino acids

Sequence
(BLAST)

001: MEGSCLQFQN PIRDAISRIR FAPQSNNLLI SSWDCSLRLY DVDGWVLRLE APTDSALLDC CFQNGSIAFS AGSDCYVRRY DLHSGIQDTI GNHDDLATCV
101: EYCDETCQVV SAGWDNKIML WDTRMKKAPG CVKILGAEVE SMSLSVFNLL VSAGASVNTY DLRMLERSAQ AEQLLMGVQI KCLRSIPNSK GFAVGSIDGR
201: VTLQIPDPSN SNDTGYSFRC HPKSKKGRDH LVAVNDIVFN PIICSAFVTC DDEGYVCSWD AQSRRRLFEL SKNPNSVVSS SYNHSGQLLA VASSCTYQEG
301: NEKEESPRIL VHVMDDNNGL VSSGTSR

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.