Factsheet for Zm00001d034081_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GRMZM5G839924_P01
Zm00001d002029_P003
Zm00001d003470_P001
Zm00001d008845_P001
Zm00001d009215_P001
Zm00001d010056_P002
Zm00001d012391_P003
Zm00001d013708_P001
Zm00001d013855_P002
Zm00001d015886_P002
Zm00001d018349_P001
Zm00001d020515_P002
Zm00001d020516_P001
Zm00001d021924_P001
Zm00001d022141_P007
Zm00001d025574_P001
Zm00001d026477_P002
Zm00001d028183_P002
Zm00001d030091_P001
Zm00001d030627_P002
Zm00001d033972_P002
Zm00001d038358_P002
Zm00001d041597_P001
Zm00001d044708_P001
Zm00001d046270_P001
Zm00001d049042_P001
Zm00001d050616_P002
Zm00001d052056_P005
Zm00001d053553_P002
Zm00001d053857_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	Zm00001d013708_P001	AT1G08780.1	20706207
AT1G69400.1	Zm00001d030091_P001	AT1G65020.1	20706207
AT1G69400.1	Zm00001d049042_P001	AT2G05830.1	20706207
AT1G69400.1	Zm00001d010056_P002	AT2G39800.1	20706207
AT1G69400.1	Zm00001d012391_P003	AT2G39800.1	20706207
AT1G69400.1	Zm00001d038358_P002	AT2G39800.1	20706207
AT1G69400.1	Zm00001d020515_P002	AT3G10180.1	20706207
AT1G69400.1	Zm00001d020516_P001	AT3G10180.1	20706207
AT1G69400.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT1G69400.1	Zm00001d009215_P001	AT3G16980.1	20706207
AT1G69400.1	Zm00001d022141_P007	AT3G16980.1	20706207
AT1G69400.1	Zm00001d018349_P001	AT3G20050.1	20706207
AT1G69400.1	Zm00001d052056_P005	AT3G20050.1	20706207
AT1G69400.1	Zm00001d003470_P001	AT4G04020.1	20706207
AT1G69400.1	Zm00001d025574_P001	AT4G04020.1	20706207
AT1G69400.1	Zm00001d008845_P001	AT4G38780.1	20706207
AT1G69400.1	Zm00001d002029_P003	AT5G20900.1	20706207
AT1G69400.1	Zm00001d013855_P002	AT5G20900.1	20706207
AT1G69400.1	Zm00001d021924_P001	AT5G20900.1	20706207
AT1G69400.1	Zm00001d026477_P002	AT5G20900.1	20706207
AT1G69400.1	Zm00001d033972_P002	AT5G20900.1	20706207
AT1G69400.1	Zm00001d044708_P001	AT5G20900.1	20706207
AT1G69400.1	Zm00001d046270_P001	AT5G20900.1	20706207
AT1G69400.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT1G69400.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT1G69400.1	Zm00001d030627_P002	AT5G49510.1	20706207
AT1G69400.1	Zm00001d041597_P001	AT5G49510.1	20706207
AT1G69400.1	Zm00001d015886_P002	AT5G58290.1	20706207
AT1G69400.1	Zm00001d050616_P002	AT5G58290.1	20706207
AT1G69400.1	GRMZM5G839924_P01	ATMG00070.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU90950	Sorghum	mitochondrion	86.05	80.19
TraesCS5A01G396600.1	Wheat	mitochondrion	61.79	57.76
TraesCS5D01G406300.1	Wheat	mitochondrion	60.47	56.52
TraesCS5B01G401600.1	Wheat	mitochondrion	60.13	56.21
HORVU5Hr1G096830.5	Barley	mitochondrion	59.14	55.28
GSMUA_Achr9P09460_001	Banana	cytosol	48.17	44.75
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	43.52	44.56
KRH70829	Soybean	cytosol	43.19	39.39
KRH74957	Soybean	cytosol	42.52	38.79
VIT_01s0113g00430.t01	Wine grape	cytosol	41.53	38.23
PGSC0003DMT400072830	Potato	cytosol	40.53	37.54
Solyc05g012720.2.1	Tomato	nucleus	33.89	36.69
AT1G69400.1	Thale cress	cytosol	37.54	35.99
CDY28548	Canola	cytosol	37.54	35.87
CDY44065	Canola	cytosol	37.54	35.87
Bra038307.1-P	Field mustard	plastid	36.88	29.37
Zm00001d044116_P001	Maize	cytosol, plastid	21.93	19.13

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	UniProt:A0A1D6L5F6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	ProteinID:ONM09546.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF17	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000843EE4E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
EnsemblPlantsGene:Zm00001d034081	EnsemblPlants:Zm00001d034081_P002	EnsemblPlants:Zm00001d034081_T002	SEG:seg	:	:

Description

Nucleotide binding protein

Coordinates

chr1:+:283569286..283578833

Molecular Weight (calculated)

33110.0 Da

IEP (calculated)

5.178

GRAVY (calculated)

-0.153

Length

301 amino acids

Sequence
(BLAST)

001: MARRSLAVDA TAGAASRVRF APTSNNLLVS SWDSGLRLYD ADEGTLRVNV ESEAAFLDCC FEDESAAFAC GSDGSVRRYD FHSGSQDTVG LHEDALACIE
101: FSSLTGQIMT GSLDKKLKLW DSKTRNVSPS GTITLNSDVA SISICGIYIL AAVERNVYLY DMRNLTRPVD EKDCPLDYQI RCLHTSLEWN AYVAGSVDGV
201: VALKYLDRGT DRDLGYAFRC HPNSRNGKWN LVPVNCISVH PCNRTFVTGD DKGCTIVWDA QLKKKLIELP MYLGSVASVA YNHNGQLLAV ASNYFLEVDK
301: E

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.