CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91182
EER91208
EER91872
EER92655
EES04545
EES05938
EES12270
EES16167
KXG22139
KXG28235
KXG33696
KXG35645
KXG39890
OQU75900
OQU82468
OQU90254

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	EER91208	AT1G08780.1	20706207
AT1G69400.1	EER91872	AT1G65020.1	20706207
AT1G69400.1	KXG28235	AT2G05830.1	20706207
AT1G69400.1	KXG22139	AT2G39800.1	20706207
AT1G69400.1	KXG33696	AT2G39800.1	20706207
AT1G69400.1	KXG35645	AT3G10180.1	20706207
AT1G69400.1	EES04545	AT3G11830.1	20706207
AT1G69400.1	OQU90254	AT3G16980.1	20706207
AT1G69400.1	EES05938	AT3G20050.1	20706207
AT1G69400.1	EES12270	AT4G04020.1	20706207
AT1G69400.1	OQU75900	AT4G38780.1	20706207
AT1G69400.1	OQU82468	AT5G20900.1	20706207
AT1G69400.1	EER92655	AT5G26360.1	20706207
AT1G69400.1	EES16167	AT5G49510.1	20706207
AT1G69400.1	EER91182	AT5G58290.1	20706207
AT1G69400.1	KXG39890	AT5G58290.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034081_P002	Maize	cytosol, mitochondrion	80.19	86.05
TraesCS5A01G396600.1	Wheat	mitochondrion	58.82	59.01
TraesCS5D01G406300.1	Wheat	mitochondrion	58.2	58.39
TraesCS5B01G401600.1	Wheat	mitochondrion	57.89	58.07
HORVU5Hr1G096830.5	Barley	mitochondrion	56.97	57.14
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	42.72	46.94
GSMUA_Achr9P09460_001	Banana	cytosol	45.82	45.68
KRH70829	Soybean	cytosol	43.34	42.42
VIT_01s0113g00430.t01	Wine grape	cytosol	42.11	41.59
KRH74957	Soybean	cytosol	42.41	41.52
Solyc05g012720.2.1	Tomato	nucleus	34.06	39.57
PGSC0003DMT400072830	Potato	cytosol	39.63	39.38
AT1G69400.1	Thale cress	cytosol	38.08	39.17
CDY44065	Canola	cytosol	37.46	38.41
CDY28548	Canola	cytosol	37.46	38.41
EER87819	Sorghum	cytosol	37.15	34.99
Bra038307.1-P	Field mustard	plastid	36.84	31.48
EES01141	Sorghum	plastid	22.29	20.93
KXG24577	Sorghum	cytosol, plastid	22.29	20.06

Protein Annotations

MapMan:13.3.5.5.2	Gene3D:2.130.10.10	EntrezGene:8086211	UniProt:A0A1Z5S4U0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:OQU90950	ProteinID:OQU90950
ProteinID:OQU90950.1	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF17	SMART:SM00320	EnsemblPlantsGene:SORBI_3001G083300	SUPFAM:SSF50978	UniParc:UPI0001A82D21	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002466420.1	:

Description

hypothetical protein

Coordinates

chr1:-:6442490..6446936

Molecular Weight (calculated)

35351.6 Da

IEP (calculated)

5.832

GRAVY (calculated)

-0.215

Length

323 amino acids

Sequence
(BLAST)

001: MARRSLAGDA TAGAASRVRF APTSNNLLVS SWDSGLRLYD ADEGTLRVSA ESEAALLDCC FEDESSAFAC GSDGSVRRYD FHSGSQDTVG LHEDVLACIE
101: FSSMTGQVMT GGLDKKIKLW DLKTRNVSPS GTIILDSDVA SLSICGVYIL AAVARNVYFY DMRNLTTPVN EKDCPLEYQI RCLHASPEWN AYVAGSVDGA
201: VALKHLDRGT DRDLGYSFRC HPKSRNGRSN LVPVNCIAVH PCKKTFVTGD DEGCTIAWDA RSKKKLIELP IYLGSVASIA YNHNGQLLAV ASNYFREVDK
301: EVIDHHQVFI ETEEDFKGKS RVG

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.