Factsheet for PGSC0003DMT400072830

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400007659
PGSC0003DMT400008203
PGSC0003DMT400043112
PGSC0003DMT400050100
PGSC0003DMT400053010
PGSC0003DMT400053837
PGSC0003DMT400060294
PGSC0003DMT400064893
PGSC0003DMT400066954
PGSC0003DMT400067201
PGSC0003DMT400068827
PGSC0003DMT400068829
PGSC0003DMT400069969
PGSC0003DMT400073947
PGSC0003DMT400078301

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G69400.1	PGSC0003DMT400050100	AT1G08780.1	20706207
AT1G69400.1	PGSC0003DMT400008203	AT1G65020.1	20706207
AT1G69400.1	PGSC0003DMT400064893	AT2G05830.1	20706207
AT1G69400.1	PGSC0003DMT400068827	AT2G39800.1	20706207
AT1G69400.1	PGSC0003DMT400068829	AT2G39800.1	20706207
AT1G69400.1	PGSC0003DMT400007659	AT3G10180.1	20706207
AT1G69400.1	PGSC0003DMT400067201	AT3G11830.1	20706207
AT1G69400.1	PGSC0003DMT400066954	AT3G20050.1	20706207
AT1G69400.1	PGSC0003DMT400043112	AT4G04020.1	20706207
AT1G69400.1	PGSC0003DMT400073947	AT4G38780.1	20706207
AT1G69400.1	PGSC0003DMT400060294	AT5G26360.1	20706207
AT1G69400.1	PGSC0003DMT400069969	AT5G49510.1	20706207
AT1G69400.1	PGSC0003DMT400053010	AT5G58290.1	20706207
AT1G69400.1	PGSC0003DMT400078301	AT5G58290.1	20706207
AT1G69400.1	PGSC0003DMT400053837	ATMG00070.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012720.2.1	Tomato	nucleus	72.92	85.25
VIT_01s0113g00430.t01	Wine grape	cytosol	56.31	55.96
KRH74957	Soybean	cytosol	54.77	53.94
KRH70829	Soybean	cytosol	53.85	53.03
GSMUA_Achr9P09460_001	Banana	cytosol	47.38	47.53
CDY28548	Canola	cytosol	43.38	44.76
AT1G69400.1	Thale cress	cytosol	42.77	44.27
CDY44065	Canola	cytosol	42.77	44.13
Zm00001d034081_P002	Maize	cytosol, mitochondrion	37.54	40.53
HORVU5Hr1G096830.5	Barley	mitochondrion	40.0	40.37
TraesCS5B01G401600.1	Wheat	mitochondrion	39.69	40.06
TraesCS5A01G396600.1	Wheat	mitochondrion	39.38	39.75
OQU90950	Sorghum	mitochondrion	39.38	39.63
TraesCS5D01G406300.1	Wheat	mitochondrion	39.08	39.44
PGSC0003DMT400066160	Potato	extracellular	36.62	35.0
Bra038307.1-P	Field mustard	plastid	40.0	34.39
Os03t0758700-01	Rice	endoplasmic reticulum, plasma membrane	24.62	27.21

Protein Annotations

EntrezGene:102580074	MapMan:13.3.5.5.2	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CR12	PFAM:PF00400	EnsemblPlantsGene:PGSC0003DMG400028334
PGSC:PGSC0003DMG400028334	EnsemblPlants:PGSC0003DMT400072830	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF17	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000296E930	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006348728.1	RefSeq:XP_006348729.1	RefSeq:XP_006348730.1
RefSeq:XP_015164821.1	:	:	:	:	:

Description

Initiation factor 5a [Source:PGSC_GENE;Acc:PGSC0003DMG400028334]

Coordinates

chr5:-:205491..210566

Molecular Weight (calculated)

35780.0 Da

IEP (calculated)

6.234

GRAVY (calculated)

-0.233

Length

325 amino acids

Sequence
(BLAST)

001: MNTFSLNLAD PIRDAISRIR FAPHSNNLLI SSWDSSLRLY DVDSSKLRME APGEAELLDC CFENERVCFS AASDGSVNRY DLDSGIKVSV GNHDDSATCV
101: EYSAETCQII TAGWDKKINF WDARSTQSHG CLSCLVSEVE SMSLSGLNLM VAAGSSVNLY DIRSFKTSVH TKGMKVKCIR PIFNPKGFVV GSIDGRVLLE
201: YICKSSSHEG YAFRCHPKVK DGRRHVVTVN DIAFNPSITG SFVTGDNDGY ATLWDARGRK RIFEMSRYPN SVVSLSYSHD GLLLAVASSY SYQEANEIEE
301: PAQIFIHEIG NCDLTSPSSG ASNKK

Best Arabidopsis Sequence Match ( AT1G69400.1 )
(BLAST)

001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL

Arabidopsis Description

BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.