Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44065 | Canola | cytosol | 96.83 | 96.83 |
| Bra038307.1-P | Field mustard | plastid | 91.75 | 76.45 |
| AT1G69400.1 | Thale cress | cytosol | 73.33 | 73.57 |
| VIT_01s0113g00430.t01 | Wine grape | cytosol | 50.16 | 48.32 |
| KRH74957 | Soybean | cytosol | 49.21 | 46.97 |
| KRH70829 | Soybean | cytosol | 48.89 | 46.67 |
| GSMUA_Achr9P09460_001 | Banana | cytosol | 45.71 | 44.44 |
| PGSC0003DMT400072830 | Potato | cytosol | 44.76 | 43.38 |
| Solyc05g012720.2.1 | Tomato | nucleus | 38.1 | 43.17 |
| TraesCS5D01G406300.1 | Wheat | mitochondrion | 42.22 | 41.3 |
| TraesCS5B01G401600.1 | Wheat | mitochondrion | 41.59 | 40.68 |
| TraesCS5A01G396600.1 | Wheat | mitochondrion | 41.27 | 40.37 |
| HORVU5Hr1G096830.5 | Barley | mitochondrion | 40.63 | 39.75 |
| Zm00001d034081_P002 | Maize | cytosol, mitochondrion | 35.87 | 37.54 |
| OQU90950 | Sorghum | mitochondrion | 38.41 | 37.46 |
| CDY42193 | Canola | cytosol, plastid | 36.83 | 34.12 |
| CDX95434 | Canola | cytosol, plastid | 36.83 | 34.12 |
| CDY03579 | Canola | cytosol, plastid | 35.56 | 32.94 |
| CDY59371 | Canola | cytosol, plastid | 34.6 | 32.15 |
| Os03t0758700-01 | Rice | endoplasmic reticulum, plasma membrane | 29.84 | 31.97 |
| CDX79657 | Canola | cytosol | 4.13 | 26.53 |
| CDY72330 | Canola | cytosol | 7.3 | 23.0 |
| CDY39955 | Canola | plastid | 23.81 | 21.55 |
| CDX87331 | Canola | plastid | 23.81 | 21.55 |
| CDX79362 | Canola | cytosol, plastid | 22.86 | 21.43 |
| CDY66129 | Canola | plastid | 23.49 | 21.39 |
| CDY53220 | Canola | plastid | 23.49 | 21.39 |
| CDX67958 | Canola | cytosol, plastid | 23.49 | 21.39 |
Protein Annotations
| MapMan:13.3.5.5.2 | Gene3D:2.130.10.10 | UniProt:A0A078GV89 | EnsemblPlants:CDY28548 | ProteinID:CDY28548 | ProteinID:CDY28548.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00040483001 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR10971 |
| PANTHER:PTHR10971:SF17 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE9ABA | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : | : |
Description
BnaC02g19170DBnaC02g19170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV89]
Coordinates
chrLK032222:+:40289..42211
Molecular Weight (calculated)
34583.6 Da
IEP (calculated)
5.853
GRAVY (calculated)
-0.179
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGARLEFQN PIEDAISKLK FSPESNNLLI ASWDSYLRLY NVESSSLILQ LYSRAALLDC CFENESTSYT SGSDGFIQRY DLNAGTVDRI GGHDDIATSV
101: LYSHEKGAVI STGLDKKIKF WDTRLGQSLV LSTDAGAPVR CITVNGNSLV VCVAASMHIY DLRSLDRPFQ SYESQVEVPI RCVTSVPFST AGYAVGSVDG
201: QVALDFPNTA CSSEMKYTFR CHPKSMKGRL HGACINSIEF TPGGSGTFVT GDNEGYVISW NAKSRRRLFE LPKYSNSVAS LAFNHTGELL AVASSHTYQE
301: ANEKEEPPQV FIHTF
101: LYSHEKGAVI STGLDKKIKF WDTRLGQSLV LSTDAGAPVR CITVNGNSLV VCVAASMHIY DLRSLDRPFQ SYESQVEVPI RCVTSVPFST AGYAVGSVDG
201: QVALDFPNTA CSSEMKYTFR CHPKSMKGRL HGACINSIEF TPGGSGTFVT GDNEGYVISW NAKSRRRLFE LPKYSNSVAS LAFNHTGELL AVASSHTYQE
301: ANEKEEPPQV FIHTF
001: MSGDRLEFEN PIEDAVSRLR FSPQSNNLLV ASWDSYLRLY DVESSSLSLE LNSQAALLDC CFENESTSFT SGSDGFIRRY DLNAGTVDTI GRHDDISTSI
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL
101: VYSYEKGEVI STGFDEKIKF WDTRQRESLV FSTDAGGAVG CVTVSGNNLV VCVDASMHIY DLRNLDEAFQ SYASQVEVPI RCITSVPYSR GYAVGSVDGR
201: VAVDFPNTSC SSEIKYSFRC HPKSRNGRLD GVCINAIEFS PCGSGTFVTG DNEGYVISWN AKSRRRLNEL PRYSNSIASL AFDHTGELLA IASSHTYQDA
301: KEKEEAPQVF IHRL
Arabidopsis Description
BUB3.3Mitotic checkpoint protein BUB3.3 [Source:UniProtKB/Swiss-Prot;Acc:F4I241]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.