CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010033.1-P	Field mustard	cytosol	100.0	100.0
CDX86232	Canola	cytosol	100.0	100.0
AT5G49510.1	Thale cress	cytosol	93.33	93.33
CDY49601	Canola	cytosol	93.33	92.86
VIT_05s0077g00740.t01	Wine grape	cytosol	78.46	81.38
KRH36957	Soybean	cytosol	74.36	76.72
KRH50707	Soybean	cytosol	29.74	76.32
Solyc05g053390.2.1	Tomato	cytosol	74.87	76.04
GSMUA_Achr2P02060_001	Banana	plastid	74.36	75.52
PGSC0003DMT400069969	Potato	cytosol, plastid	73.33	74.48
Zm00001d041597_P001	Maize	cytosol, extracellular	71.79	74.47
KRH11921	Soybean	cytosol	74.36	74.36
EES16167	Sorghum	cytosol	72.31	73.82
Os12t0562900-01	Rice	plastid	73.85	73.47
Zm00001d030627_P002	Maize	cytosol	70.77	73.02
CDY00028	Canola	cytosol	93.85	71.48
TraesCS5A01G086100.1	Wheat	cytosol	70.26	70.26
TraesCS5B01G092100.2	Wheat	golgi	70.26	70.26
TraesCS5D01G099500.1	Wheat	cytosol	70.26	70.26
HORVU5Hr1G022470.1	Barley	cytosol	69.23	65.53
KRH02379	Soybean	cytosol	44.62	50.0

Protein Annotations

EnsemblPlants:CDX85412	EnsemblPlantsGene:GSBRNA2T00143098001	Gene3D:1.10.287.370	GO:A0A078D8H8	GO:GO:0005575	GO:GO:0006457
GO:GO:0008150	GO:GO:0009987	GO:GO:0016272	InterPro:IPR009053	InterPro:PFD3	InterPro:Prefoldin
InterPro:Prefoldin_subunit_alpha	ncoils:Coil	PANTHER:PTHR12409	PFAM:PF02996	PIRSF:PIRSF016396	ProteinID:CDX85412
ProteinID:CDX85412.1	SEG:seg	SUPFAM:SSF46579	UniParc:UPI000253EECB	MapMan:20.3.2.3	:

Description

BnaC07g27230D

Coordinates

chrLK031841:+:1691419..1693411

Molecular Weight (calculated)

21424.4 Da

IEP (calculated)

4.426

GRAVY (calculated)

-0.182

Length

195 amino acids

Sequence
(BLAST)

001: MSSSSPSGSG GDLSERRGIP AAKFIQDVET YLSQSSLDSN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VGTLEARKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEATALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RIYNYDVQQR RVKQVAPTAI TAADS

Best Arabidopsis Sequence Match ( AT5G49510.1 )
(BLAST)

001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS

Arabidopsis Description

PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.