Factsheet for VIT_05s0077g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36957	Soybean	cytosol	85.64	85.19
KRH11921	Soybean	cytosol	86.7	83.59
GSMUA_Achr2P02060_001	Banana	plastid	85.11	83.33
KRH50707	Soybean	cytosol	33.51	82.89
AT5G49510.1	Thale cress	cytosol	84.57	81.54
Solyc05g053390.2.1	Tomato	cytosol	81.38	79.69
PGSC0003DMT400069969	Potato	cytosol, plastid	80.85	79.17
CDY49601	Canola	cytosol	82.45	79.08
Bra036139.1-P	Field mustard	cytosol	81.91	78.57
Os12t0562900-01	Rice	plastid	81.91	78.57
Bra010033.1-P	Field mustard	cytosol	81.38	78.46
CDX86232	Canola	cytosol	81.38	78.46
CDX85412	Canola	cytosol	81.38	78.46
Zm00001d041597_P001	Maize	cytosol, extracellular	78.19	78.19
EES16167	Sorghum	cytosol	79.26	78.01
Zm00001d030627_P002	Maize	cytosol	77.66	77.25
TraesCS5A01G086100.1	Wheat	cytosol	76.6	73.85
TraesCS5B01G092100.2	Wheat	golgi	76.6	73.85
TraesCS5D01G099500.1	Wheat	cytosol	76.6	73.85
HORVU5Hr1G022470.1	Barley	cytosol	76.06	69.42
CDY00028	Canola	cytosol	82.45	60.55
KRH02379	Soybean	cytosol	52.13	56.32

Protein Annotations

Gene3D:1.10.287.370	EntrezGene:100265427	wikigene:100265427	MapMan:20.3.2.3	ProteinID:CCB47960	ProteinID:CCB47960.1
ncoils:Coil	UniProt:F6H713	EMBL:FN595246	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005844	GO:GO:0006457
GO:GO:0007017	GO:GO:0007021	GO:GO:0008150	GO:GO:0009987	GO:GO:0015631	GO:GO:0016043
GO:GO:0016272	InterPro:IPR009053	EntrezGene:LOC100265427	wikigene:LOC100265427	PFAM:PF02996	InterPro:PFD3
PIRSF:PIRSF016396	PANTHER:PTHR12409	InterPro:Prefoldin	InterPro:Prefoldin_subunit_alpha	SUPFAM:SSF46579	TIGR:TC67138
UniParc:UPI00015CBFAB	ArrayExpress:VIT_05s0077g00740	EnsemblPlantsGene:VIT_05s0077g00740	EnsemblPlants:VIT_05s0077g00740.t01	unigene:Vvi.10286	RefSeq:XP_002279358
RefSeq:XP_002279358.1	SEG:seg	:	:	:	:

Description

Prefoldin subunit 3 [Source:UniProtKB/TrEMBL;Acc:F6H713]

Coordinates

chr5:-:538938..545259

Molecular Weight (calculated)

20908.9 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.174

Length

188 amino acids

Sequence
(BLAST)

001: MASSSSSPAV TERRGIPGAS FVHDVQTYLT ESGLDCNSAL AFLQERLQQY KLVEMKLLAQ QRDLQAKIPD IEKCLDVVAT LEAKKGTGEP LIADFEVSEG
101: IYSRARIEDT DSVCLWLGAN VMLEYSCEEA TALLQKNLEN AKASLEVLVT DLQFLRDQVT ITQVTIARVY NWDVHQRRIR QAAAAQDS

Best Arabidopsis Sequence Match ( AT5G49510.1 )
(BLAST)

001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS

Arabidopsis Description

PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.