CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36957	Soybean	cytosol	94.36	97.35
KRH50707	Soybean	cytosol	34.36	88.16
VIT_05s0077g00740.t01	Wine grape	cytosol	83.59	86.7
GSMUA_Achr2P02060_001	Banana	plastid	81.54	82.81
AT5G49510.1	Thale cress	cytosol	77.95	77.95
Solyc05g053390.2.1	Tomato	cytosol	74.87	76.04
PGSC0003DMT400069969	Potato	cytosol, plastid	74.87	76.04
EES16167	Sorghum	cytosol	74.36	75.92
Zm00001d030627_P002	Maize	cytosol	73.33	75.66
Os12t0562900-01	Rice	plastid	75.9	75.51
Zm00001d041597_P001	Maize	cytosol, extracellular	72.31	75.0
CDX86232	Canola	cytosol	74.36	74.36
CDX85412	Canola	cytosol	74.36	74.36
Bra010033.1-P	Field mustard	cytosol	74.36	74.36
CDY49601	Canola	cytosol	74.36	73.98
Bra036139.1-P	Field mustard	cytosol	74.36	73.98
TraesCS5A01G086100.1	Wheat	cytosol	73.33	73.33
TraesCS5B01G092100.2	Wheat	golgi	73.33	73.33
TraesCS5D01G099500.1	Wheat	cytosol	73.33	73.33
HORVU5Hr1G022470.1	Barley	cytosol	73.33	69.42
KRH02379	Soybean	cytosol	53.85	60.34
CDY00028	Canola	cytosol	74.36	56.64

Protein Annotations

Gene3D:1.10.287.370	EntrezGene:100527836	MapMan:20.3.2.3	EMBL:ACUP02009254	EMBL:BT092717	UniProt:C6T5K5
ncoils:Coil	EnsemblPlantsGene:GLYMA_15G139100	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005844	GO:GO:0006457	GO:GO:0007017
GO:GO:0007021	GO:GO:0008150	GO:GO:0009987	GO:GO:0015631	GO:GO:0016043	GO:GO:0016272
InterPro:IPR009053	EnsemblPlants:KRH11921	ProteinID:KRH11921	ProteinID:KRH11921.1	PFAM:PF02996	InterPro:PFD3
PIRSF:PIRSF016396	PANTHER:PTHR12409	InterPro:Prefoldin	InterPro:Prefoldin_subunit_alpha	SUPFAM:SSF46579	UniParc:UPI0001B15E2F
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:11331119..11337337

Molecular Weight (calculated)

21412.4 Da

IEP (calculated)

4.402

GRAVY (calculated)

-0.132

Length

195 amino acids

Sequence
(BLAST)

001: MASSSSASGS GSASAVTERR GIPGAQFVED VQTYLTQSGL DVGSALAFLQ ERLQQYKVVE MKLLAQQRDL QAKIPDIEKC LDVVATLKAK KGTGEELIAD
101: FEVSEGIYSQ ARIEETDSVC LWLGANVMLE YSLEEATGLL QKNLDNARAS LEVLIADLQF LRDQVTITQV TIARVYNWDV HQRRIQQAVA TTAQD

Best Arabidopsis Sequence Match ( AT5G49510.1 )
(BLAST)

001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS

Arabidopsis Description

PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.