CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11921	Soybean	cytosol	97.35	94.36
VIT_05s0077g00740.t01	Wine grape	cytosol	85.19	85.64
KRH50707	Soybean	cytosol	34.39	85.53
GSMUA_Achr2P02060_001	Banana	plastid	80.42	79.17
AT5G49510.1	Thale cress	cytosol	79.37	76.92
Solyc05g053390.2.1	Tomato	cytosol	77.25	76.04
PGSC0003DMT400069969	Potato	cytosol, plastid	76.72	75.52
EES16167	Sorghum	cytosol	76.19	75.39
Zm00001d041597_P001	Maize	cytosol, extracellular	74.6	75.0
CDY49601	Canola	cytosol	77.78	75.0
Bra036139.1-P	Field mustard	cytosol	77.78	75.0
Zm00001d030627_P002	Maize	cytosol	74.6	74.6
Os12t0562900-01	Rice	plastid	77.25	74.49
CDX86232	Canola	cytosol	76.72	74.36
CDX85412	Canola	cytosol	76.72	74.36
Bra010033.1-P	Field mustard	cytosol	76.72	74.36
TraesCS5A01G086100.1	Wheat	cytosol	75.13	72.82
TraesCS5B01G092100.2	Wheat	golgi	75.13	72.82
TraesCS5D01G099500.1	Wheat	cytosol	75.13	72.82
HORVU5Hr1G022470.1	Barley	cytosol	75.13	68.93
KRH02379	Soybean	cytosol	53.97	58.62
CDY00028	Canola	cytosol	77.78	57.42

Protein Annotations

Gene3D:1.10.287.370	EntrezGene:100305759	MapMan:20.3.2.3	EMBL:ACUP02005403	EMBL:BT089535	UniProt:C6SWJ2
ncoils:Coil	EnsemblPlantsGene:GLYMA_09G034400	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005844	GO:GO:0006457	GO:GO:0007017
GO:GO:0007021	GO:GO:0008150	GO:GO:0009987	GO:GO:0015631	GO:GO:0016043	GO:GO:0016272
InterPro:IPR009053	EnsemblPlants:KRH36957	ProteinID:KRH36957	ProteinID:KRH36957.1	PFAM:PF02996	InterPro:PFD3
PIRSF:PIRSF016396	PANTHER:PTHR12409	InterPro:Prefoldin	InterPro:Prefoldin_subunit_alpha	SUPFAM:SSF46579	UniParc:UPI0001B14FCA
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:2877555..2883016

Molecular Weight (calculated)

21023.0 Da

IEP (calculated)

4.489

GRAVY (calculated)

-0.164

Length

189 amino acids

Sequence
(BLAST)

001: MASSSSESAV SERRGIPGAQ FVEDVQTYLT QSGLDVGSAL AFLQERLQQY KVVEMKLLAQ QRDLQAKIPD IEKCLDVVAT LKAKKGTGEE LIADFEVSEG
101: IYSRARIEET NSVCLWLGAN VMLEYSLEEA TGLLQKNLDN ARASLEVLIA DLQFLRDQVT ITQVTIARVY NWDVHQRRVQ QAVATTAQD

Best Arabidopsis Sequence Match ( AT5G49510.1 )
(BLAST)

001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS

Arabidopsis Description

PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.