CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036139.1-P	Field mustard	cytosol	98.47	98.47
CDX85412	Canola	cytosol	92.86	93.33
CDX86232	Canola	cytosol	92.86	93.33
AT5G49510.1	Thale cress	cytosol	92.35	92.82
VIT_05s0077g00740.t01	Wine grape	cytosol	79.08	82.45
KRH36957	Soybean	cytosol	75.0	77.78
KRH50707	Soybean	cytosol	29.59	76.32
GSMUA_Achr2P02060_001	Banana	plastid	73.98	75.52
Solyc05g053390.2.1	Tomato	cytosol	73.98	75.52
CDY00028	Canola	cytosol	98.47	75.39
EES16167	Sorghum	cytosol	72.96	74.87
PGSC0003DMT400069969	Potato	cytosol, plastid	72.96	74.48
Zm00001d041597_P001	Maize	cytosol, extracellular	71.43	74.47
KRH11921	Soybean	cytosol	73.98	74.36
Os12t0562900-01	Rice	plastid	73.98	73.98
Zm00001d030627_P002	Maize	cytosol	70.92	73.55
TraesCS5A01G086100.1	Wheat	cytosol	70.41	70.77
TraesCS5B01G092100.2	Wheat	golgi	70.41	70.77
TraesCS5D01G099500.1	Wheat	cytosol	70.41	70.77
HORVU5Hr1G022470.1	Barley	cytosol	69.9	66.5
KRH02379	Soybean	cytosol	44.9	50.57

Protein Annotations

Gene3D:1.10.287.370	MapMan:20.3.2.3	GO:A0A078II02	UniProt:A0A078II02	EnsemblPlants:CDY49601	ProteinID:CDY49601
ProteinID:CDY49601.1	ncoils:Coil	GO:GO:0005575	GO:GO:0006457	GO:GO:0008150	GO:GO:0009987
GO:GO:0016272	EnsemblPlantsGene:GSBRNA2T00093445001	InterPro:IPR009053	PFAM:PF02996	InterPro:PFD3	PIRSF:PIRSF016396
PANTHER:PTHR12409	InterPro:Prefoldin	InterPro:Prefoldin_subunit_alpha	SUPFAM:SSF46579	UniParc:UPI0004EF02F5	SEG:seg

Description

BnaA09g03370DPrefoldin subunit 3 [Source:UniProtKB/TrEMBL;Acc:A0A078II02]

Coordinates

chrLK032847:-:6138..8145

Molecular Weight (calculated)

21536.4 Da

IEP (calculated)

4.371

GRAVY (calculated)

-0.166

Length

196 amino acids

Sequence
(BLAST)

001: MSSSSPSGSG GDDLSERRGI PAAKFIQDVE TYLSQSGFDS NSALAFHQER LQQYKVVEMK LLAQQRDLQA KIPDIEKCLE VVATLEARKG TGESLLADFE
101: VSEGIYSRAC IEDTDSVCLW LGANVMLEYS CEEATALLKN NLENAKASLE VLVADLQFLR DQVTVTQVTI ARIYNFDVHQ RRVNQVTPTA IAAADA

Best Arabidopsis Sequence Match ( AT5G49510.1 )
(BLAST)

001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS

Arabidopsis Description

PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.