Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra036139.1-P | Field mustard | cytosol | 75.78 | 98.98 |
| CDY49601 | Canola | cytosol | 75.39 | 98.47 |
| CDX85412 | Canola | cytosol | 71.48 | 93.85 |
| CDX86232 | Canola | cytosol | 71.48 | 93.85 |
| AT5G49510.1 | Thale cress | cytosol | 70.7 | 92.82 |
| VIT_05s0077g00740.t01 | Wine grape | cytosol | 60.55 | 82.45 |
| KRH36957 | Soybean | cytosol | 57.42 | 77.78 |
| KRH50707 | Soybean | cytosol | 22.66 | 76.32 |
| GSMUA_Achr2P02060_001 | Banana | plastid | 57.03 | 76.04 |
| Solyc05g053390.2.1 | Tomato | cytosol | 56.64 | 75.52 |
| EES16167 | Sorghum | cytosol | 55.86 | 74.87 |
| PGSC0003DMT400069969 | Potato | cytosol, plastid | 55.86 | 74.48 |
| Zm00001d041597_P001 | Maize | cytosol, extracellular | 54.69 | 74.47 |
| KRH11921 | Soybean | cytosol | 56.64 | 74.36 |
| Os12t0562900-01 | Rice | plastid | 56.64 | 73.98 |
| Zm00001d030627_P002 | Maize | cytosol | 54.3 | 73.55 |
| TraesCS5A01G086100.1 | Wheat | cytosol | 53.91 | 70.77 |
| TraesCS5B01G092100.2 | Wheat | golgi | 53.91 | 70.77 |
| TraesCS5D01G099500.1 | Wheat | cytosol | 53.91 | 70.77 |
| HORVU5Hr1G022470.1 | Barley | cytosol | 53.52 | 66.5 |
| KRH02379 | Soybean | cytosol | 34.38 | 50.57 |
Protein Annotations
| EnsemblPlants:CDY00028 | EnsemblPlantsGene:GSBRNA2T00109507001 | Gene3D:1.10.287.370 | GO:A0A078EL14 | GO:GO:0005575 | GO:GO:0006457 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016272 | InterPro:IPR009053 | InterPro:PFD3 | InterPro:Prefoldin |
| InterPro:Prefoldin_subunit_alpha | ncoils:Coil | PANTHER:PTHR12409 | PFAM:PF02996 | ProteinID:CDY00028 | ProteinID:CDY00028.1 |
| SEG:seg | SUPFAM:SSF46579 | UniParc:UPI0004EF1B5B | MapMan:20.3.2.3 | : | : |
Description
BnaC09g02730D
Coordinates
chrLK031916:-:302213..304180
Molecular Weight (calculated)
28087.5 Da
IEP (calculated)
4.453
GRAVY (calculated)
0.055
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSSPSGSG GDDLSERRGI PAAKFIQDVE TYLSQSGFDS NSALAFHQER LQQYKVVEMK LLAQQRDLQA KIPDIEKCLE VVATLEARKG TGEVELGCAL
101: ILAAYLKTFS LKVLISMLAC EIEHVVSQNI VLASLEESTE TSFKSCLIVT AEHSLLADFE VSEGIYSRAC IEDTDSVCLW LGANVMLEYS CEEATALLRN
201: NLENAKASLE VLVADLQFLR DQVTVTQVTI ARIYNYDVHQ RRVKQVTPTA IAAADA
101: ILAAYLKTFS LKVLISMLAC EIEHVVSQNI VLASLEESTE TSFKSCLIVT AEHSLLADFE VSEGIYSRAC IEDTDSVCLW LGANVMLEYS CEEATALLRN
201: NLENAKASLE VLVADLQFLR DQVTVTQVTI ARIYNYDVHQ RRVKQVTPTA IAAADA
001: MSSSSPSGSG SDLTERRGIP AAKFIQDVET YLSQSGLDPN SALAFHQERL QQYKVVEMKL LAQQRDLQAK IPDIEKCLEV VATLEAKKGT GEALLADFEV
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS
101: SEGIYSRACI EDTDSVCLWL GANVMLEYSC EEASALLKNN LENAKASLEV LVADLQFLRD QVTVTQVTIA RVYNWDVHQR RVKQVTPTAI AVADS
Arabidopsis Description
PFD3Probable prefoldin subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:P57741]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.