Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79657 | Canola | cytosol | 34.0 | 69.39 |
| CDY66129 | Canola | plastid | 66.0 | 19.08 |
| CDY53220 | Canola | plastid | 66.0 | 19.08 |
| CDX87331 | Canola | plastid | 66.0 | 18.97 |
| CDY39955 | Canola | plastid | 66.0 | 18.97 |
| CDX79362 | Canola | cytosol, plastid | 62.0 | 18.45 |
| KRH43922 | Soybean | nucleus | 63.0 | 18.16 |
| CDX67958 | Canola | cytosol, plastid | 62.0 | 17.92 |
| KRH10504 | Soybean | cytosol, plastid | 62.0 | 17.87 |
| VIT_09s0002g09150.t01 | Wine grape | cytosol, plastid | 61.0 | 17.68 |
| VIT_12s0055g00900.t01 | Wine grape | cytosol, plastid | 61.0 | 17.43 |
| CDY59371 | Canola | cytosol, plastid | 33.0 | 9.73 |
| CDY03579 | Canola | cytosol, plastid | 33.0 | 9.71 |
| CDY42193 | Canola | cytosol, plastid | 32.0 | 9.41 |
| CDX95434 | Canola | cytosol, plastid | 32.0 | 9.41 |
| CDY44065 | Canola | cytosol | 23.0 | 7.3 |
| CDY28548 | Canola | cytosol | 23.0 | 7.3 |
Protein Annotations
| EnsemblPlants:CDY72330 | EnsemblPlantsGene:GSBRNA2T00027702001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR10971 | PANTHER:PTHR10971:SF16 | ProteinID:CDY72330 | ProteinID:CDY72330.1 |
| UniParc:UPI0004EECF49 | UniProt:A0A078K0Y6 | MapMan:35.1 | : | : | : |
Description
BnaAnng40710DBnaAnng40710D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0Y6]
Coordinates
chrLK050223:-:974..2019
Molecular Weight (calculated)
11607.8 Da
IEP (calculated)
9.613
GRAVY (calculated)
-0.317
Length
100 amino acids
Sequence
(BLAST)
(BLAST)
1: NEFKRIVSPL KYQTRCVTAF PDQQGFLVYH RNCSTEVRVG VHHLDDSQQN KNFTFKYHRD GNEIYSINAL NFHPLLASLP SVINGSFGLH VLLPSRRLFF
001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK
Arabidopsis Description
RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.