CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10504	Soybean	cytosol, plastid	97.98	97.98
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	89.63	88.86
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	86.46	86.96
KRH71020	Soybean	cytosol, plastid	86.17	86.17
KRH75181	Soybean	nucleus	85.59	85.59
CDX79657	Canola	cytosol	10.09	71.43
CDY72330	Canola	cytosol	18.16	63.0
KRH35682	Soybean	nucleus	32.28	32.94
KRG91092	Soybean	nucleus	31.99	32.65
KRG91104	Soybean	nucleus	31.7	31.98
KRH35672	Soybean	cytosol	10.95	29.01
KRH70829	Soybean	cytosol	23.05	24.24
KRH74957	Soybean	cytosol	22.19	23.33

Protein Annotations

EntrezGene:100527204	Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EMBL:ACUP02004903	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_08G180700
GO:GO:0000972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0006405	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0043130	UniProt:I1KUE9	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH43922
ProteinID:KRH43922	ProteinID:KRH43922.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023386ED	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:14477738..14482789

Molecular Weight (calculated)

38828.9 Da

IEP (calculated)

8.329

GRAVY (calculated)

-0.449

Length

347 amino acids

Sequence
(BLAST)

001: MSNFLSNTNP NPNKSFEVNQ PPTDSVSSLS FSPKANFLVA TSWDNQVRCW EVAQNGVNVA TVPKASITHD HPVLCSTWKD DGTTVFSGGC DKQVKMWPLL
101: SGGQPMTVAM HDAPIKEVAW IPEMNLLVTG SWDKTLKYWD TRQSNPVHTQ QLPERCYAMT VRHPLMVVGT ADRNLIVYNL QNPQVEFKRI VSPLKYQTRC
201: LAAFPDQQGF LVGSIEGRVG VHHLDDSQQG KNFTFKCHRE GNEIYSVNSL NFHPVHHTFA TSGSDGAFNF WDKDSKQRLK AMLRCSLPIP CSTFNNDGSI
301: FAYSVCYDWS KGAENSNPAT AKTYIFLHLP QESEVRGKPR IGATGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.