CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH25071
KRH43086
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	KRH25071	AT4G05420.1	18223036
AT1G80670.1	KRH43086	AT4G05420.1	18223036
AT1G80670.1	KRH59212	AT4G05420.1	18223036
AT1G80670.1	KRH59213	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH71020	Soybean	cytosol, plastid	98.56	98.56
KRH43922	Soybean	nucleus	85.59	85.59
KRH10504	Soybean	cytosol, plastid	85.59	85.59
Solyc10g047000.1.1	Tomato	nucleus	83.57	82.86
AT1G80670.1	Thale cress	cytosol, plastid	83.0	82.52
CDY53220	Canola	plastid	82.13	82.37
CDY66129	Canola	plastid	82.13	82.37
Bra008447.1-P	Field mustard	plastid	82.13	82.37
Os08t0176800-01	Rice	plastid	80.98	82.16
CDX87331	Canola	plastid	81.56	81.32
CDY39955	Canola	plastid	81.56	81.32
Bra035162.1-P	Field mustard	plastid	81.56	81.32
CDX67958	Canola	cytosol, plastid	80.98	81.21
Bra003577.1-P	Field mustard	cytosol	64.27	80.8
TraesCS1D01G034200.1	Wheat	plastid	78.67	79.59
TraesCS1A01G033000.1	Wheat	plastid	78.39	79.3
TraesCS1B01G041300.1	Wheat	plastid	78.39	79.3
CDX79362	Canola	cytosol, plastid	75.79	78.27
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	81.27	76.22
GSMUA_Achr6P30360_001	Banana	cytosol, plastid	80.98	75.95
Os01t0635400-01	Rice	cytosol, plastid	74.93	75.58
KXG24577	Sorghum	cytosol, plastid	78.1	75.49
TraesCS3A01G226200.1	Wheat	plastid	74.06	74.49
TraesCS3B01G258300.1	Wheat	plastid	74.06	74.49
EES01141	Sorghum	plastid	73.49	74.13
TraesCS3D01G224200.1	Wheat	plastid	73.49	73.91
Zm00001d044116_P001	Maize	cytosol, plastid	72.33	72.75
AT1G15850.1	Thale cress	plastid	28.82	71.43
HORVU1Hr1G004960.1	Barley	plastid	80.4	68.22
HORVU3Hr1G056400.2	Barley	cytosol, plastid	72.62	63.16
KRG91104	Soybean	nucleus	32.28	32.56
KRH35682	Soybean	nucleus	31.41	32.06
KRG91092	Soybean	nucleus	30.84	31.47
KRH35672	Soybean	cytosol	10.95	29.01
KRH70829	Soybean	cytosol	21.9	23.03
KRH74957	Soybean	cytosol	21.61	22.73

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	EMBL:ACUP02000145	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_01G067900	GO:GO:0000972
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0006405
GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0043130
UniProt:I1J673	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH75181	ProteinID:KRH75181
ProteinID:KRH75181.1	PFAM:PF00400	PRINTS:PR00320	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971
PANTHER:PTHR10971:SF16	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00023378D2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:11249529..11256939

Molecular Weight (calculated)

38636.4 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.528

Length

347 amino acids

Sequence
(BLAST)

001: MSTFGAAANT NPNKSYEVAQ PPSDSISSLC FSPKANFLVA TSWDNQVRCW EITRNGTVVN STPKASISHE QPVLCSAWKD DGTTVFSGGC DKQVKMWPLT
101: SGGQPMTVAM HDAPVKDIAW IPEMNLLASG SWDKTLKYWD TRQSNPVHTQ QLPDRCYAIT VKHPLMVVGT ADRNLIVFNL QSPQTEYKRI VSPLKYQTRS
201: VAAFPDQQGF LVGSIEGRVG VHHLDDAQQN KNFTFKCHRE NNEIYSVNSL NFHPVHHTFA TAGSDGAFNF WDKDSKQRLK AMQRCSQPIP CSTFNNDGSI
301: FAYAVCYDWS KGAENHNPAT AKNYIYLHLP QESEVKGKPR AGATGRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.