Factsheet for GSMUA_Achr6P30360_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr8P07200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G80670.1	GSMUA_Achr8P07200_001	AT4G05420.1	18223036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P30400_001	Banana	cytosol, plastid	95.95	95.95
Os08t0176800-01	Rice	plastid	78.65	85.09
VIT_12s0055g00900.t01	Wine grape	cytosol, plastid	78.11	82.57
KRH71020	Soybean	cytosol, plastid	76.76	81.84
TraesCS1B01G041300.1	Wheat	plastid	75.68	81.63
TraesCS1D01G034200.1	Wheat	plastid	75.68	81.63
TraesCS1A01G033000.1	Wheat	plastid	75.41	81.34
KRH75181	Soybean	nucleus	75.95	80.98
VIT_09s0002g09150.t01	Wine grape	cytosol, plastid	74.86	80.29
KXG24577	Sorghum	cytosol, plastid	76.76	79.11
Bra008447.1-P	Field mustard	plastid	73.24	78.32
CDY53220	Canola	plastid	73.24	78.32
CDY66129	Canola	plastid	73.24	78.32
Solyc10g047000.1.1	Tomato	nucleus	74.05	78.29
Bra003577.1-P	Field mustard	cytosol	58.38	78.26
AT1G80670.1	Thale cress	cytosol, plastid	73.78	78.22
CDX87331	Canola	plastid	73.24	77.87
Bra035162.1-P	Field mustard	plastid	73.24	77.87
TraesCS3B01G258300.1	Wheat	plastid	72.43	77.68
TraesCS3A01G226200.1	Wheat	plastid	72.16	77.39
EES01141	Sorghum	plastid	71.89	77.33
Os01t0635400-01	Rice	cytosol, plastid	71.89	77.33
CDY39955	Canola	plastid	72.7	77.3
CDX67958	Canola	cytosol, plastid	72.16	77.17
TraesCS3D01G224200.1	Wheat	plastid	71.89	77.1
Zm00001d044116_P001	Maize	cytosol, plastid	71.08	76.23
CDX79362	Canola	cytosol, plastid	67.84	74.7
HORVU1Hr1G004960.1	Barley	plastid	75.41	68.22
AT1G15850.1	Thale cress	plastid	25.14	66.43
HORVU3Hr1G056400.2	Barley	cytosol, plastid	71.08	65.91
GSMUA_Achr4P10920_001	Banana	cytosol	31.35	33.92
GSMUA_Achr9P09460_001	Banana	cytosol	21.35	24.38
GSMUA_Achr4P03390_001	Banana	extracellular	17.3	15.13

Protein Annotations

Gene3D:2.130.10.10	MapMan:23.5.1.1.1.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G30360_001
EnsemblPlants:GSMUA_Achr6P30360_001	EnsemblPlants:GSMUA_Achr6T30360_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0TBI1
PFAM:PF00400	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR10971	PANTHER:PTHR10971:SF16	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000296A6CA	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

Rae1-like protein At1g80670 [Source:GMGC_GENE;Acc:GSMUA_Achr6G30360_001]

Coordinates

chr6:+:30376452..30387236

Molecular Weight (calculated)

41035.5 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.416

Length

370 amino acids

Sequence
(BLAST)

001: MASFGGLNTA AAGNVNPNKS LEVLPSPSDS VSSLSFSPKG NYLVATSWDN QVRCWEIMAG SSQPKASISH DHPVLCSTWK DDGTTVFSGG CDKTVKMWPL
101: MSGGQPTTVA AHDAPVKEIA WIQQMNLLVT GSWDKTLRHA TLITIKYDIK ASSSSLYLQK YWDTRQAQPV HTQQLPERCY ALTVQYPLMV VGTADRQLQI
201: FNLQNPQTVF KTITSPLKYQ TRCLAAFPDQ QGFLVGSIEG RVGVHHLDDA QQSKNFTFKC HREGNEIYSV NSMNFHPVHH TFVTAGSDGA FNFWDKDSKQ
301: RLKAMARCPH PIPCSTFNHD GSIFAYAVCY DWSKGAENHN PATAKTYIYL HSPQESEVKA KPRLGTGSRK

Best Arabidopsis Sequence Match ( AT1G80670.1 )
(BLAST)

001: MATFGAPATA NSNPNKSYEV TPSPADSISS LSFSPRADIL VATSWDNQVR CWEISRSGAS LASAPKASIS HDQPVLCSAW KDDGTTVFSG GCDKQAKMWP
101: LLSGGQPVTV AMHEGPIAAM AWIPGMNLLA TGSWDKTLKY WDTRQQNPVH TQQLPDKCYT LSVKHPLMVV GTADRNLIVF NLQNPQTEFK RIQSPLKYQT
201: RCVTAFPDQQ GFLVGSIEGR VGVHHLDDSQ QSKNFTFKCH RDGNDIYSVN SLNFHPVHGT FATAGSDGAF NFWDKDSKQR LKAMSRCNQP IPCSSFNHDG
301: SIYAYAACYD WSKGAENHNP ATAKSSIFLH LPQESEVKAK PRVGATGRK

Arabidopsis Description

RAE1Protein RAE1 [Source:UniProtKB/Swiss-Prot;Acc:Q38942]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.